FTP Download

You can download via a browser from our FTP site, use a script, or even use rsync from the command line.

Globus

For rapid bulk download of files, the Ensembl FTP site is available as an end point in the Globus Online system. In order to access the data you need to sign up for an account with Globus, install the Globus Connect Personal software and setup a personal endpoint to download the data. The Ensembl data is hosted at the EMBL-EBI end point called "EMBL-EBI Public Data". Data from the Ensembl FTP site can then be found under the "/ensemblorg/pub". You can also click here to open the target directory.

API Code

If you do not have access to git, you can obtain our latest API code as a gzipped tarball:

Download complete API for this release

Note: the API version needs to be the same as the databases you are accessing, so please use git to obtain a previous version if querying older databases.

Database dumps

Entire databases can be downloaded from our FTP site in a variety of formats. Please be aware that some of these files can run to many gigabytes of data.

Looking for MySQL dumps to install databases locally? See our web installation instructions for full details.

Each directory on https://ftp.ebi.ac.uk/ensemblgenomes contains a README file, explaining the directory structure.

Multi-species data

Database	MySQL	TSV	EMF	MAF	XML
Pan_compara Multi-species	MySQL	TSV	EMF		XML
Metazoa Multi-species	MySQL	TSV	EMF	MAF	XML
Ensembl Mart	MySQL

Single species data

Popular species are listed first. You can customise this list via our home page.

	Species	DNA (FASTA)	cDNA (FASTA)	CDS (FASTA)	ncRNA (FASTA)	Protein sequence (FASTA)	Annotated sequence (EMBL)	Annotated sequence (GenBank)	Gene sets	Other annotations	Whole databases	Variation (GVF)	Variation (VCF)	Variation (Ensembl VEP)
Y	Caenorhabditis elegans (Nematode, N2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
Y	Anopheles gambiae (African malaria mosquito, PEST) - GCA_000005575.1	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
Y	Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
Y	Apis mellifera (Honey bee, DH4)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
Y		FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
Y		FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Acanthaster planci (Crown-of-thorns starfish)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Acromyrmex echinatior (Panamanian leaf-cutter ant)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Acropora millepora (Stony coral, JS-1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Actinia equina (Beadlet anemone, AE1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Actinia tenebrosa (Australian red waratah sea anemone)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Acyrthosiphon pisum (Pea aphid, AL4f)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Adelges cooleyi (Spruce gall adelgid, 19-005CV)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Adineta vaga (Rotifer)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Aedes aegypti (Yellow fever mosquito, LVP_AGWG)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Aedes albopictus (Asian tiger mosquito, Foshan) - GCA_035046485.1	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Aethina tumida (Small hive beetle, Nest 87)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Agrilus planipennis (Emerald ash borer, EAB-ADULT)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Amblyteles armatorius (Ichneumon Wasp, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Amphibalanus amphitrite (Acorn barnacle, SeventyFive)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Amphimedon queenslandica (Demosponge)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Amyelois transitella (Naval orange worm, UIUC subculture of SPIRL-1966)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anastrepha ludens (Mexican fruit fly, Willacy)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anastrepha obliqua (WestIndian fruit fly, idAnaObli1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ancistrocerus nigricornis (Potter wasp, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anneissia japonica (Sea lily, Jap-2015-1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles albimanus (Mosquito, ALBI9_A) - GCA_000349125.2	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles albimanus (Mosquitos, STELCA) - GCF_013758885.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles arabiensis (Mosquito, Dongola)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles atroparvus (Mosquito, Infravec2 EBRE)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles christyi (Mosquito, ACHKN1017)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles coluzzii (Mosquito, Ngousso) - GCA_004136515.2	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles coluzzii (Mosquitos)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles culicifacies (Mosquito, A-37)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles darlingi (American malaria mosquito) - GCA_943734745.1	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles darlingi (American malaria mosquito, Coari)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles dirus (Mosquito, WRAIR2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles epiroticus (Mosquito, Epiroticus2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles farauti (Mosquito, FAR1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles funestus (African malaria mosquito)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles funestus (African malaria mosquito, FUMOZ)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles gambiae (African malaria mosquito) - GCA_943734735.2	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles maculatus (Mosquito, maculatus3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles melas (Mosquito, CM1001059_A)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles merus (Mosquito, MAF)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles minimus (Mosquito, MINIMUS1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles quadriannulatus (Mosquito, SANGWE) - GCA_000349065.1	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles sinensis (Mosquito, China)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anopheles sinensis (Mosquito, SINENSIS)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles stephensi (Asian malaria mosquito, Indian)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anopheles stephensi (Asian malaria mosquito, SDA-500)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Anoplophora glabripennis (Asian long-horned beetle, ALB-LARVAE)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Anthonomus grandis grandis (Boll weevil)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Aphidius gifuensis (Parasitoid wasp, YNYX2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Apis dorsata (Giant honeybee)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Apis florea (Dwarf honeybee)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Aplysia californica (California sea hare, F4 #8)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Argiope bruennichi (Spiders) - GCF_947563725.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ascaris suum (Pig roundworm, AG01)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Asterias rubens (European starfish)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Athalia rosae (Coleseed sawfly, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Atta cephalotes (Leaf-cutter ant)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bactrocera dorsalis (Oriental fruit fly, Punador)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bactrocera latifrons (Solanum fruit fly, USDA-ARS-PBARC rearing strain)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bactrocera tryoni (Queensland fruitfly, S06)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Belgica antarctica (Antarctic midge)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bemisia tabaci (Silverleaf whitefly, Asia II-5)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bemisia tabaci (Silverleaf whitefly, SSA1-SG1 Ng)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bemisia tabaci (Silverleaf whitefly, SSA1-SG1 Ug)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bemisia tabaci (Silverleaf whitefly, SSA2 Ng)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bemisia tabaci (Silverleaf whitefly, SSA3 Ng)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bemisia tabaci (Silverleaf whitefly, Uganda-1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bicyclus anynana (Squinting bush brown)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Biomphalaria glabrata (Bloodfluke planorb) - GCA_947242115.1	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Biomphalaria glabrata (Bloodfluke planorb, BB02)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Bombus affinis (Rusty patched bumble bee, iyBomAffi1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombus huntii (Hunt's bumblebee, Logan2020A)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombus impatiens (Common eastern bumblebee)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombus terrestris (buff-tailed bumblebee, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombus vancouverensis nearcticus (Montane Bumble Bee, JDL1245)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombyx mandarina (Wild silkworm, Bman2017)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombyx mori (Domestic silkworm, p50T)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Bombyx mori (Silk Moth) - GCF_030269925.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Branchiostoma lanceolatum (Amphioxus)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Brugia malayi (Nematode, FR3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Caenorhabditis brenneri (Nematode)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Caenorhabditis briggsae (Nematode)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Caenorhabditis japonica (Nematode)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Caenorhabditis remanei (Nematode)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Camponotus floridanus (Florida carpenter ant, SB8)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Capitella teleta (Bristle worm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cataglyphis hispanica (Desert ant, Lineage 1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Centruroides sculpturatus (Bark scorpion, CEXI.00-Female)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ceratitis capitata (Mediterranean fruit fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Chelonus insularis (Parasitoid wasp, UGA/USDA-ARS -01)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cherax quadricarinatus (Australian red claw crayfish, HC-2022)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Chrysoperla carnea (Insects) - GCF_905475395.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cimex lectularius (Bed bug, Harlan)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Clytia hemisphaerica (Jellyfish, Z4C2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Copidosoma floridanum (Parasitoid wasp, CFLO.00-Male)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Coremacera marginata (Sieve-winged Snailkiller, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cotesia glomerata (White butterfly parasite wasp, CgM1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Crassostrea angulata (Portuguese oyster, pt1a10)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Crassostrea gigas (Pacific oyster)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Crassostrea virginica (Eastern oyster, RU13XGHG1-28)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cryptotermes secundus (Drywood termite)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ctenocephalides felis (Cat flea, EL2017-DRISC)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Culex pipiens pallens (Northern house mosquito, TS)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Culex quinquefasciatus (Southern house mosquito, JHB)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Culex quinquefasciatus (Southern house mosquito, Johannesburg)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Culicoides brevitarsis (Flies, CSIRO-B50_1) - GCF_036172545.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Culicoides sonorensis (Biting Midge)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cydia pomonella (The codling moth, Wapato2018A) - GCF_033807575.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Cylas formicarius (Sweet potato weevil, icCylForm1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Daktulosphaira vitifoliae (Grape phylloxera, Bord-2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Danaus plexippus plexippus (Monarch butterfly, F-2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Daphnia carinata (Water flea, CSIRO-1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Daphnia magna (Fresh water planktonic, NIES)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Daphnia pulex (Common water flea, KAP4)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Daphnia pulicaria (Water flea, SC F1-1A)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dendroctonus ponderosae (Mountain pine beetle)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dendronephthya gigantea (Carnation coral, DGI-Jeju-01)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dermacentor andersoni (Rocky Mountain wood tick, qqDerAnde1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dermacentor silvarum (Tick, Dsil-2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dermatophagoides pteronyssinus (European house dust mite, airmid)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Diabrotica virgifera virgifera (Western corn rootworm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Diabrotica virgifera virgifera (Western corn rootworm, Ped12-6-A-3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Diaphorina citri (Asian citrus psyllid)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dimorphilus gyrociliatus (Segmented worms)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dinothrombium tinctorium (Red velvet mite, UoL-WK)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Diorhabda carinulata (Northern tamarisk beetle, Delta)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Diorhabda sublineata (Subtropical tamarisk beetle, icDioSubl1.1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Diuraphis noxia (Russian wheat aphid, RWA2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dreissena polymorpha (Zebra mussel, Duluth1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila albomicans (Fruit fly, 15112-1751.03)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila ananassae (Fruit fly, 14024-0371.13)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila ananassae (Fruit fly, TSC#14024-0371.13)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila arizonae (Fruit fly, ariz_Son04)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila biarmipes (Fruit fly, raj3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila bipectinata (Fruit fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila busckii (Fruit fly, San Diego stock center stock number 13000-0081.31)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila elegans (Fruit fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila erecta (Fruit fly, 14021-0224.00,06,07)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila erecta (Fruit fly, TSC#14021-0224.01)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila eugracilis (Fruit fly, 14026-0451.02)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila ficusphila (Fruit fly, 14025-0441.05)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila grimshawi (Fruit fly, 15287-2541.00)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila grimshawi (Fruit fly, TSC#15287-2541.00)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila guanche (Fruit fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila gunungcola (Fruit fly, Sukarami)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila hydei (Fruit fly, 15085-1641.00,03,60)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila innubila (Fruit fly, TH190305)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila kikkawai (Fruit fly, 14028-0561.14)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila mauritiana (Fruit fly, mau12)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila miranda (Fruit fly, MSH22)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila mojavensis (Fruit fly, 15081-1352.22)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila mojavensis (Fruit fly, TSC#15081-1352.22)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila navojoa (Fruit fly, navoj_Jal97)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila obscura (Fruit fly, BZ-5 IFL)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila persimilis (Fruit fly, 14011-0111.01,24,50)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila persimilis (Fruit fly, MSH-3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila pseudoobscura (Fruit fly, MV2-25)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila pseudoobscura pseudoobscura (Fruit fly, MV2-25)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila rhopaloa (Fruit fly, 14029-0021.01)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila santomea (Fruit fly, STO CAGO 1482)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila sechellia (Fruit fly, Rob3c)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila sechellia (Fruit fly, sech25)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila simulans (Fruit fly, w501)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila simulans (Fruit fly, w501)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila subobscura (Fruit fly, 14011-0131.10)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila subpulchrella (Fruit fly, 33 F10 #4)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila suzukii (Fruit fly, WT3_2.0)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila takahashii (Fruit fly, IR98-3 E-12201)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila teissieri (Fruit fly, GT53w)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila virilis (Fruit fly, 15010-1051.48,49,85)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila virilis (Fruit fly, TSC#15010-1051.87)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila willistoni (Fruit fly, 14030-0811.24)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila willistoni (Fruit fly, TSC#14030-0811.24)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Drosophila yakuba (Fruit fly, Tai18E2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Dufourea novaeangliae (Bee, 0120121106)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Echinococcus granulosus (Dog tapeworm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Eriocheir sinensis (Chinese mitten crab)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Eufriesea mexicana (Bee, 0111107269)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Eurytemora carolleeae (Crustaceans) - GCF_000591075.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Exaiptasia diaphana (Sea anemone, CC7)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Folsomia candida (Springtail, str. VU population)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Galendromus occidentalis (Western predatory mite)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Galleria mellonella (Greater wax moth, Carbio01_MB)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Gigantopelta aegis (Deep sea snail, Gae_Host)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glossina austeni (Tsetse fly, TTRI)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glossina brevipalpis (Tsetse fly, IAEA)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glossina fuscipes (Tsetse fly, IAEA_lab_2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glossina morsitans morsitans (Tsetse fly, Yale) - GCA_001077435.1	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glossina pallidipes (Tsetse fly, IAEA)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glossina palpalis gambiensis (Tsetse fly, IAEA)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Glyphotaelius pellucidus (Caddisflies, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Gordionus sp. m RMFG-2023 (Horsehair worms) - GCF_954871325.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Habropoda laboriosa (Southeastern blueberry bee, 0110345459)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Haemaphysalis longicornis (Longhorned tick, HaeL-2018) - GCA_013339765.2	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Halichondria panicea (Sponges) - GCF_963675165.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Haliotis rubra (Blacklip abalone, DU_JTF1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Haliotis rufescens (Red abalone, VD_foot)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Halyomorpha halys (Brown marmorated stink bug, HHAL.00)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Harpegnathos saltator (Indian jumping ant, DR-91)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Heliconius melpomene (Postman butterfly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Helicoverpa armigera (Cotton bollworm, SCD)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Helicoverpa zea (Corn earworm, HzStark_Cry1AcR)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Helobdella robusta (Freshwater leech)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hermetia illucens (Black soldier fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hofstenia miamia (Panther worm, MS-H3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Homalodisca vitripennis (Glassy winged sharpshooter, AUS2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Homarus americanus (American lobster, GMGI-L3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Homarus gammarus (European lobster, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hyalella azteca (Amphipod, HAZT.00-mixed)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hyalomma asiaticum (Tick, Hyas-2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hyalomma asiaticum (Tick, Hyas-2018) - GCA_013339685.2	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hydra vulgaris (Swiftwater hydra, 105)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hydractinia symbiolongicarpus (Hydrozoan, clone_291-10)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hylaeus anthracinus (Anthricinan yellow-faced bee, JK02)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hylaeus volcanicus (Volcano Masked Bee, JK05)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hymenolepis microstoma (Rodent tapeworm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Hypsibius exemplaris (Water bear tardigrade, Z151)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ichneumon xanthorius (Ichneumon Wasp, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ischnura elegans (Damselflies) - GCF_921293095.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ixodes persulcatus (Taiga tick, Iper-2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ixodes persulcatus (Taiga tick, Iper-2018) - GCA_013358835.2	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ixodes scapularis (Black-legged tick, ISE6)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ixodes scapularis (Black-legged tick, PalLabHiFi)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ixodes scapularis (Black-legged tick, Wikel)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Leguminivora glycinivorella (Soybean pod borer, SPB_JAAS2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lepeophtheirus salmonis (Salmon louse, Lsal2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Leptinotarsa decemlineata (Colorado potato beetle, Imidocloprid resistant)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Leptotrombidium deliense (Harvest mite, UoL-UT)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Limnephilus lunatus (Caddisflies, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Limnephilus marmoratus (Caddisflies, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Limnephilus rhombicus (Caddisflies, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Limnoperna fortunei (Golden mussel, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Limulus polyphemus (Atlantic horseshoe crab)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Linepithema humile (Argentine ant)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lineus longissimus (Bootlace worm, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lingula anatina (Lamp shell, Amm_Jpn)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Liolophura japonica (Chitons, JHLJ2023) - GCF_032854445.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Loa loa (Eye worm, Cameroon SouthWest Province isolate)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lottia gigantea (Owl limpet)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lucilia cuprina (Australian sheep blowfly, LS)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lucilia cuprina (Australian sheep blowfly, Lc7/37)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lutzomyia longipalpis (Sand fly, Jacobina)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Lutzomyia longipalpis (Sand fly, SR_M1_2022)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lytechinus pictus (Painted urchin, DCL-2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Lytechinus variegatus (Green sea urchin, NC3)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Machimus atricapillus (Kite-tailed Robberfly, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Macrobrachium nipponense (Crustaceans, FS-2020) - GCF_015104395.2 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Macrosteles quadrilineatus (Aster leafhopper, MER2022)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Magallana gigas (Bivalves) - GCF_963853765.1 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Malaya genurostris (Mosquitos, Urasoe2022)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Manduca sexta (Tobacco hornworm, Smith_Timp_Sample1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Mayetiola destructor (Hessian fly, Kansas Great Plain)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Megachile rotundata (Alfalfa leafcutting bee)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Megaselia scalaris (Coffin fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Melanaphis sacchari (Sugarcane aphid, LSU)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Melitaea cinxia (Glanville fritillary, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Mercenaria mercenaria (Hard clam (quahog), YKG-2019)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Microctonus aethiopoides (Parasitoid wasp, French)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Microctonus aethiopoides (Parasitoid wasp, Irish)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Microctonus aethiopoides (Parasitoid wasp, Moroccan)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Microctonus hyperodae (Parasitoid wasp, Lincoln)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Microplitis demolitor (Parasitoid wasp, Queensland-Clemson2020A)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Microplitis mediator (Endoparasitoid wasp, UGA2020A)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Mizuhopecten yessoensis (Yesso scallop, PY_sf001)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Mnemiopsis leidyi (Warty comb jelly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Monomorium pharaonis (Pharaoh ant, MP-MQ-018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Musca domestica (House fly, aabys)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Mya arenaria (Soft-shell clam, MELC-2E11)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Myopa tessellatipennis (Thick-headed flies, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Mytilus californianus (California mussel, M0D057914Y)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Nasonia vitripennis (Jewel wasp, AsymCx)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Necator americanus (New World hookworm, N. amaericanus Hunan isolate)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Nematostella vectensis (Starlet sea anemone, CH2 x CH6)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Neodiprion lecontei (Redheaded pine sawfly, iyNeoLeco1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Neodiprion pinetum (White pine sawfly, iyNeoPine1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Nilaparvata lugens (Brown planthopper, BPH)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Octopus bimaculoides (California two-spot octopus, UCB-OBI-ISO-001)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Octopus sinensis (East Asian common octopus)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Onchocerca volvulus (Nematode, O. volvulus Cameroon isolate)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Onthophagus taurus (Dung beetle)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ooceraea biroi (Clonal raider ant, clonal line C1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Oppia nitens (Oribatid soil mite, AA-2021)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Orbicella faveolata (Mountainous star coral, FL)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Orchesella cincta (Springtail)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Orussus abietinus (Parasitic wood wasp, OABI.00-Male)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Ostrea edulis (European flat oyster, OE_ROSLIN_2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Owenia fusiformis (Segmented worms)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Panonychus citri (Citrus red mite, SS)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Paramacrobiotus metropolitanus (Water bear tardigrade, TYO)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Parasteatoda tepidariorum (Common house spider, Goettingen)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Patella pellucida (Blue-rayed limpet, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Patella vulgata (Common limpet, reference)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Patiria miniata (Bat star starfish, m_02_andy)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pecten maximus (Great Scallop)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pectinophora gossypiella (Pink bollworm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pediculus humanus corporis (Human body louse, USDA)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Penaeus chinensis (Fleshy prawn)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Penaeus japonicus (Kuruma shrimp, Ginoza2017)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Penaeus monodon (Black tiger shrimp, SGIC_2016)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Penaeus vannamei (Pacific white shrimp)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Phlebotomus argentipes (Sand fly)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Phlebotomus papatasi (Sand fly, Israel)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	GVF	VCF	Ensembl VEP
	Phlebotomus papatasi (Sand fly, M1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Phlebotomus perniciosus (Murcia)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Platynereis dumerilii (Dumeril's clam worm, lab) - GCA_026936325.1 [Community annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Plodia interpunctella (Indianmeal moth, USDA-ARS_2022_Savannah)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pocillopora damicornis (Cauliflower coral, RSMAS)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pogonomyrmex barbatus (Red harvester ant)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Polistes canadensis (Red paper wasp, GaletaPanama2010)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Polistes dominula (European paper wasp, PdomPennStateAug2009)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Polistes fuscatus (Common paper wasp, 324)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pollicipes pollicipes (Goose neck barnacle, AB1234)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pomacea canaliculata (Apple snail, SZHN2017)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pomphorhynchus laevis (Thorny-headed worm, GPI110)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Portunus trituberculatus (Swimming crab, SZX2019)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Priapulus caudatus (Penis worm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Pristionchus pacificus (Nematode, PS312)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Procambarus clarkii (Red swamp crayfish, Jiangsu)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Rhagoletis pomonella (Apple magot fly, Grant_MI)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Rhipicephalus microplus (Southern cattle tick, Rmic-2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Rhipicephalus sanguineus (Brown dog tick, Rsan-2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Rhodnius prolixus (Kissing bug, CDC) - GCA_000181055.3	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Rhopalosiphum maidis (Corn leaf aphid, BTI-1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Saccoglossus kowalevskii (Acorn worm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Sarcoptes scabiei (Itch mite, SSS_KF_BRIS2020)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistocerca americana (American grasshopper, TAMUIC-IGC-003095)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistocerca cancellata (South American locust, TAMUIC-IGC-003103)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistocerca gregaria (Grasshoppers, iqSchGreg1)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistocerca nitens (Vagrant locust, TAMUIC-IGC-003100)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistocerca piceifrons (Central American locust, TAMUIC-IGC-003096)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistocerca serialis cubense (Grasshoppers, TAMUIC-IGC-003099)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistosoma haematobium (Flatworms) - GCF_000699445.3 [RefSeq annotation]	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistosoma haematobium (Urinary blood fluke)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Schistosoma mansoni (Flatworm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Sipha flava (Yellow sugarcane aphid, LNK)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Sitophilus oryzae (Rice weevil)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Solenopsis invicta (Red fire ant, M01_SB)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Spodoptera frugiperda (Fall armyworm, SF20-4)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Stegodyphus dumicola (Social spider, AA2019)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Stegodyphus mimosarum (African social velvet spider)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Stomoxys calcitrans (Stable fly, USDA)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Strigamia maritima (Soil centipede)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Strongylocentrotus purpuratus (Purple sea urchin, Spur 01)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Strongyloides ratti (Threadworm)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Stylophora pistillata (Hood coral, CSM Monaco)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Teleopsis dalmanni (Malaysian stalk-eyed fly, 2A)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Tetranychus urticae (Two-spotted spider mite)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Thelohanellus kitauei (Myxozoan endoparasite)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Thrips palmi (Melon Thrips, BJ-2018)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Tigriopus californicus (Copepod, San Diego)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Topomyia yanbarensis (Mosquitos, Yona2022)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Toxorhynchites rutilus septentrionalis (Elephant mosquito, SRP)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Trialeurodes vaporariorum (Greenhouse whitefly, IVF)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Tribolium castaneum (Red flour beetle, Georgia GA2)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Tribolium madens (Black flour beetle, multiple individuals)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Trichinella spiralis (Pork worm, ISS_195)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Trichogramma pretiosum (Parasitoid wasp, Unisexual culture from Peru)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Trichoplax adhaerens (Placozoa, Grell-BS-1999)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Trichuris muris (Nematode)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Uloborus diversus (Orb Weaver, 005)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Uranotaenia lowii (Mosquitos, MFRU-FL)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Varroa destructor (Honeybee mite)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Varroa jacobsoni (Varroa mite, VJ856)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Venturia canescens (Endoparasitoid wasp, UGA)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Wyeomyia smithii (Pitcher plant Mosquito, HCP4-BCI-WySm-NY-G18)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Zerene cesonia (Southern Dogface)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Zeugodacus cucurbitae (Melon fly, PBARC_wt_2022May)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP
	Zootermopsis nevadensis (Nevada dampwood termite)	FASTA	FASTA	FASTA	FASTA	FASTA	EMBL	GenBank	GTF GFF3	TSV JSON	MySQL	-	-	Ensembl VEP

Metadata

Data files containing metadata for Ensembl Genomes from release 15 onwards can be found in the root directory or appropriate division directory of each release e.g. https://ftp.ebi.ac.uk/ensemblgenomes/pub/current/metazoa/.

The following files are provided:

species.txt (or e.g. species_EnsemblMetazoa.txt) - simple tab-separated file containing basic information about each genome
species_metadata.json (or e.g. species_metadata_EnsemblMetazoa.json) - full metadata about each genome in JSON format, including comparative analyses, sequence region names etc.
species_metadata.xml (or e.g. species_metadata_EnsemblMetazoa.xml) - full metadata about each genome in XML format, including comparative analyses, sequence region names etc.
uniprot_report.txt (or e.g. uniprot_report_EnsemblMetazoa.txt) - specialised tab-separated file containing information about mapping of genome to UniProtKB

To facilitate storage and download all databases are GNU Zip (gzip, *.gz) compressed.

About the data

The following types of data dumps are available on the FTP site.

FASTA

FASTA sequence databases of Ensembl gene, transcript and protein model predictions. Since the FASTA format does not permit sequence annotation, these database files are mainly intended for use with local sequence similarity search algorithms. Each directory has a README file with a detailed description of the header line format and the file naming conventions.

DNA: Masked and unmasked genome sequences associated with the assembly (contigs, chromosomes etc.).; The header line in an FASTA dump files containing DNA sequence consists of the following attributes : coord_system:version:name:start:end:strand This coordinate-system string is used in the Ensembl API to retrieve slices with the SliceAdaptor.
CDS: Coding sequences for Ensembl or ab initio predicted genes.
cDNA: cDNA sequences for Ensembl or ab initio predicted genes.
Peptides: Protein sequences for Ensembl or ab initio predicted genes.
RNA: Non-coding RNA gene predictions.

Annotated sequence

Flat files allow more extensive sequence annotation by means of feature tables and contain thus the genome sequence as annotated by the automated Ensembl genome annotation pipeline. Each nucleotide sequence record in a flat file represents a 1Mb slice of the genome sequence. Flat files are broken into chunks of 1000 sequence records for easier downloading.

EMBL: Ensembl database dumps in EMBL nucleotide sequence database format
GenBank: Ensembl database dumps in GenBank nucleotide sequence database format

MySQL

All Ensembl MySQL databases are available in text format as are the SQL table definition files. These can be imported into any SQL database for a local installation of a mirror site. Generally, the FTP directory tree contains one directory per database. For more information about these databases and their Application Programming Interfaces (or APIs) see the API section.

GTF

Gene sets for each species. These files include annotations of both coding and non-coding genes. This file format is described here.

GFF3

GFF3 provides access to all annotated transcripts which make up an Ensembl gene set. This file format is described here.

JSON

Genome and annotation data in JSON format for each species. This file format is described here.

EMF flatfile dumps (comparative data)

Alignments of resequencing data are available for several species as Ensembl Multi Format (EMF) flatfile dumps. The accompanying README file describes the file format.

Also, the same format is used to dump whole-genome multiple alignments as well as gene-based multiple alignments and phylogentic trees used to infer Ensembl orthologues and paralogues. These files are available in the ensembl_compara database which will be found in the mysql directory.

MAF (comparative data)

MAF files are provided for all pairwise alignments containing human (GRCh38), and all multiple alignments. The MAF file format is described here.

GVF (variation data)

GVF (Genome Variation Format) is a simple tab-delimited format derived from GFF3 for variation positions across the genome. There are GVF files for different types of variation data (e.g. somatic variants, structural variants etc). For more information see the "README" files in the GVF directory.

VCF (variation data)

VCF (Variant Call Format) is a text file format containing meta-information lines, a header line, and then data lines each containing information about a position in the genome. This file format can also contain genotype information on samples for each position. More details about the format and its specifications are available here.

VEP (variation data)

Compressed text files (called "cache files") used by the Variant Effect Predictor tool. More information about these files is available here.

BED format files (comparative data)

Constrained elements calculated using GERP are available in BED format. For more information see the accompanying README file.

BED format is a simple line-based format. The first 3 mandatory columns are:

chromosome name (may start with 'chr' for compliance with UCSC)
start position. This is a 0-based position
end position.

More information on the BED file format...

Tarball

The entire Ensembl API is gzipped and concatenated into a single TAR file. This is updated daily.

FTP Download

Globus

API Code

Database dumps

Multi-species data

Single species data

Metadata

About the data

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