EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

Caenorhabditis briggsae (Nematode) vs Caenorhabditis elegans (Nematode, N2) Synteny results

The syntenic regions between Caenorhabditis briggsae (Nematode) (Caenorhabditis briggsae, CB4) and Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans, WBcel235) were extracted from their pairwise alignment in Ensembl Metazoa release 91. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 873 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Caenorhabditis briggsae (Nematode)

Uncovered: 10,416,945 out of 108,419,665
Covered: 98,002,720 out of 108,419,665

Uncovered: 1,027,848 out of 26,221,638
Covered: 25,193,790 out of 26,221,638

Caenorhabditis elegans (Nematode, N2)

Uncovered: 12,752,803 out of 100,286,401
Covered: 87,533,598 out of 100,286,401

Uncovered: 2,406,165 out of 42,382,821
Covered: 39,976,656 out of 42,382,821