EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
------------
-
Echinococcus granulosus (Dog tapeworm) (Echinococcus granulosus)
-------
Schistosoma mansoni (Flatworm) (Schistosoma mansoni)
-------
-
Dimorphilus gyrociliatus (Segmented worms) (Dimorphilus gyrociliatus)
--------
----
Owenia fusiformis (Segmented worms) (Owenia fusiformis)
-----------
Helobdella robusta (Freshwater leech) (Helobdella robusta)
-----------
-
Mizuhopecten yessoensis (Yesso scallop, PY_sf001) (Mizuhopecten yessoensis strain PY_sf001)
----------
Crassostrea gigas (Pacific oyster) (Crassostrea gigas)
----
-------
-
Haliotis rufescens (Red abalone, VD_foot) (Haliotis rufescens strain VD_foot)
-------
-------
Haliotis rubra (Blacklip abalone, DU_JTF1) (Haliotis rubra strain DU_JTF1)
----------
-----
Gigantopelta aegis (Deep sea snail, Gae_Host) (Gigantopelta aegis strain Gae_Host)
-----------------
Lottia gigantea (Owl limpet) (Lottia gigantea)
--------------------------------
--------------
Biomphalaria glabrata (Bloodfluke planorb, BB02) (Biomphalaria glabrata strain BB02)
---------------------
Octopus bimaculoides (California two-spot octopus, UCB-OBI-ISO-001) (Octopus bimaculoides strain UCB-OBI-ISO-001)
----------------------
Pomphorhynchus laevis (Thorny-headed worm, GPI110) (Pomphorhynchus laevis strain GPI110)
----------------------
Lingula anatina (Lamp shell, Amm_Jpn) (Lingula anatina strain Amm_Jpn)
-----------------------
Adineta vaga (Rotifer) (Adineta vaga)
-------------------------------------------
-
Paramacrobiotus metropolitanus (Water bear tardigrade, TYO) (Paramacrobiotus metropolitanus strain TYO)
----------
Hypsibius exemplaris (Water bear tardigrade, Z151) (Hypsibius exemplaris strain Z151)
----------
Daphnia pulex (Common water flea, KAP4) (Daphnia pulex strain KAP4)
------------------------------
-
Daphnia pulicaria (Water flea, SC F1-1A) (Daphnia pulicaria strain SC F1-1A)
-------------
Daphnia magna (Fresh water planktonic, NIES) (Daphnia magna strain NIES)
-----------------------------
-
Pollicipes pollicipes (Goose neck barnacle, AB1234) (Pollicipes pollicipes strain AB1234)
----------
-------
Amphibalanus amphitrite (Acorn barnacle, SeventyFive) (Amphibalanus amphitrite strain SeventyFive)
-------------------
-
Lepeophtheirus salmonis (Salmon louse, Lsal2020) (Lepeophtheirus salmonis strain Lsal2020)
----------------------------
----
Tigriopus californicus (Copepod, San Diego) (Tigriopus californicus strain San Diego)
----
--------------------
Eurytemora affinis (Calanoid copepod, Atlantic clade) (Eurytemora affinis strain Atlantic clade)
----------------
----
-
Homarus americanus (American lobster, GMGI-L3) (Homarus americanus strain GMGI-L3)
-------------------
----
Homarus gammarus (European lobster, reference) (Homarus gammarus reference strain)
-------------------
--------
Procambarus clarkii (Red swamp crayfish, Jiangsu) (Procambarus clarkii strain Jiangsu)
----------
----------
------------
Portunus trituberculatus (Swimming crab, SZX2019) (Portunus trituberculatus strain SZX2019)
----------------
-------------
Penaeus chinensis (Fleshy prawn) (Penaeus chinensis)
----------------------
------------
-
Penaeus japonicus (Kuruma shrimp, Ginoza2017) (Penaeus japonicus strain Ginoza2017)
-------------------------
Penaeus vannamei (Pacific white shrimp) (Penaeus vannamei)
-------------------------
Penaeus monodon (Black tiger shrimp, SGIC_2016) (Penaeus monodon strain SGIC_2016)
--------------------------------------
Hyalella azteca (Amphipod, HAZT.00-mixed) (Hyalella azteca strain HAZT.00-mixed)
------------------------------
-
Acyrthosiphon pisum (Pea aphid, AL4f) (Acyrthosiphon pisum strain AL4f)
-------------------------
Cimex lectularius (Bed bug, Harlan) (Cimex lectularius strain Harlan)
------------------------------
-
Schistocerca americana (American grasshopper, TAMUIC-IGC-003095) (Schistocerca americana strain TAMUIC-IGC-003095)
----------------
----------------
----
Zootermopsis nevadensis (Nevada dampwood termite) (Zootermopsis nevadensis)
-----------------------------
-
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)
-------
-------------------
Anopheles gambiae (African malaria mosquito, PEST) (Anopheles gambiae strain PEST)
-------------------------
-
Bombus terrestris (buff-tailed bumblebee, reference) (Bombus terrestris reference strain)
----
-------
-------
-
----
Bombus terrestris (Buff-tailed bumblebee) (Bombus terrestris Bter_1.0)
--------------------------
Apis mellifera (Honey bee, DH4) (Apis mellifera strain DH4)
---------------------------
Tribolium castaneum (Red flour beetle, Georgia GA2) (Tribolium castaneum strain Georgia GA2)
---------------------------
Bombyx mori (Domestic silkworm, p50T) (Bombyx mori strain p50T)
------------------------------------------------
Strigamia maritima (Soil centipede) (Strigamia maritima)
---------------------------------------------
-
Ixodes scapularis (Black-legged tick, PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)
-------------
Limulus polyphemus (Atlantic horseshoe crab) (Limulus polyphemus)
--------------------------------------------------
-
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)
-------------
Loa loa (Eye worm, Cameroon SouthWest Province isolate) (Loa loa strain Cameroon SouthWest Province isolate)
------------------------------------------------------
Priapulus caudatus (Penis worm) (Priapulus caudatus)
--------------
-
Acanthaster planci (Crown-of-thorns starfish) (Acanthaster planci)
----------
----
Asterias rubens (European starfish) (Asterias rubens)
----------------
-
Lytechinus variegatus (Green sea urchin, NC3) (Lytechinus variegatus strain NC3)
----------
----
----
Lytechinus pictus (Painted urchin, DCL-2020) (Lytechinus pictus strain DCL-2020)
--------------------
Strongylocentrotus purpuratus (Purple sea urchin, Spur 01) (Strongylocentrotus purpuratus strain Spur 01)
----
------------------------------------
----------------
Anneissia japonica (Sea lily, Jap-2015-1) (Anneissia japonica strain Jap-2015-1)
-----------------------------
Saccoglossus kowalevskii (Acorn worm) (Saccoglossus kowalevskii)
-----------------------------
Branchiostoma lanceolatum (Amphioxus) (Branchiostoma lanceolatum)
--------------------------------------------------------------
Hofstenia miamia (Panther worm, MS-H3) (Hofstenia miamia strain MS-H3)
----------------------
-
Clytia hemisphaerica (Jellyfish, Z4C2) (Clytia hemisphaerica strain Z4C2)
-------------
Hydra vulgaris (Swiftwater hydra, 105) (Hydra vulgaris strain 105)
-------------
-
Stylophora pistillata (Hood coral, CSM Monaco) (Stylophora pistillata strain CSM Monaco)
-------------
----
Acropora millepora (Stony coral, JS-1) (Acropora millepora strain JS-1)
-
----------------------------------------
----
--------
Orbicella faveolata (Mountainous star coral, FL) (Orbicella faveolata strain FL)
-------------------
Nematostella vectensis (Starlet sea anemone, CH2 x CH6) (Nematostella vectensis strain CH2 x CH6)
----------
--------
-
Exaiptasia diaphana (Sea anemone, CC7) (Exaiptasia diaphana strain CC7)
----------------
Actinia equina (Beadlet anemone, AE1) (Actinia equina strain AE1)
-------------------------
Dendronephthya gigantea (Carnation coral, DGI-Jeju-01) (Dendronephthya gigantea strain DGI-Jeju-01)
--------------------------
Thelohanellus kitauei (Myxozoan endoparasite) (Thelohanellus kitauei)
---------------------------------------------------------------
Mnemiopsis leidyi (Warty comb jelly) (Mnemiopsis leidyi)
---------------------------------------------------------------
Trichoplax adhaerens (Placozoa, Grell-BS-1999) (Trichoplax adhaerens strain Grell-BS-1999)
----------------------------------------------------------------
Amphimedon queenslandica (Demosponge) (Amphimedon queenslandica)