Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Stylophora pistillata (CSM Monaco) - GCA_002571385.1 (Stylophora pistillata strain CSM Monaco)
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Pocillopora damicornis (RSMAS) - GCA_003704095.1 (Pocillopora damicornis strain RSMAS)
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Acropora millepora (Stony coral, JS-1) - GCA_013753865.1 (Acropora millepora strain JS-1)
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Orbicella faveolata (Mountainous star coral, FL) - GCA_002042975.1 (Orbicella faveolata strain FL)
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Actinia tenebrosa (Australian red waratah sea anemone) - GCA_009602425.1 (Actinia tenebrosa)
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Actinia equina (AE1) - GCA_011057435.1 (Actinia equina strain AE1)
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Exaiptasia diaphana (Sea anemone, CC7) - GCA_001417965.1 (Exaiptasia diaphana strain CC7)
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Nematostella vectensis (Nematostella vectensis strain CH2 x CH6)
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Clytia hemisphaerica (Z4C2) (Clytia hemisphaerica strain Z4C2)
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Hydra vulgaris (Swiftwater hydra, 105) - GCA_022113875.1 (Hydra vulgaris strain 105)
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Thelohanellus kitauei (Thelohanellus kitauei)
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Lingula anatina (Lingula anatina LinAna1.0)
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Lingula anatina (Lamp shell (Brachiopod), Amm_Jpn) - GCA_001039355.2 (Lingula anatina strain Amm_Jpn)
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Capitella teleta (Capitella teleta)
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Owenia fusiformis (Segmented worms) - GCA_903813345.1 (Owenia fusiformis)
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Dimorphilus gyrociliatus (Segmented worms) - GCA_904063045.1 (Dimorphilus gyrociliatus)
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Helobdella robusta (Helobdella robusta)
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Schistosoma mansoni (PRJEA36577) (Schistosoma mansoni)
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Hymenolepis microstoma (PRJEB124) (Hymenolepis microstoma)
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Crassostrea gigas (Pacific oyster) - GCA_902806645.1 (Crassostrea gigas)
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Crassostrea virginica (RU13XGHG1-28) - GCA_002022765.4 (Crassostrea virginica strain RU13XGHG1-28)
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Mizuhopecten yessoensis (Yesso scallop, PY_sf001) - GCA_002113885.2 (Mizuhopecten yessoensis strain PY_sf001)
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Mercenaria mercenaria (Hard clam (quahog), YKG-2019) - GCA_014805675.2 (Mercenaria mercenaria strain YKG-2019)
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Octopus bimaculoides (Octopus, UCB-OBI-ISO-001) - GCA_001194135.1 (Octopus bimaculoides strain UCB-OBI-ISO-001)
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Octopus bimaculoides (Octopus bimaculoides PRJNA270931)
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Octopus sinensis (East Asian common octopus) - GCA_006345805.1 (Octopus sinensis)
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Aplysia californica (California sea hare, F4 #8) - GCA_000002075.2 (Aplysia californica strain F4 #8)
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Biomphalaria glabrata (Biomphalaria glabrata strain BB02)
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Pomacea canaliculata (SZHN2017) - GCA_003073045.1 (Pomacea canaliculata strain SZHN2017)
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Gigantopelta aegis (Deep sea snail, Gae_Host) - GCA_016097555.1 (Gigantopelta aegis strain Gae_Host)
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Lottia gigantea (Lottia gigantea)
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Adineta vaga (Adineta vaga)
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Stegodyphus mimosarum (Stegodyphus mimosarum)
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Parasteatoda tepidariorum (Goettingen) - GCA_000365465.3 (Parasteatoda tepidariorum strain Goettingen)
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Ixodes scapularis (Ixodes scapularis strain Wikel)
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Ixodes scapularis (PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)
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Rhipicephalus sanguineus (Rsan-2018) (Rhipicephalus sanguineus strain Rsan-2018)
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Rhipicephalus microplus (Rmic-2018) (Rhipicephalus microplus strain Rmic-2018)
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Dermacentor silvarum (Dsil-2018) (Dermacentor silvarum strain Dsil-2018)
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Varroa destructor (Varroa destructor)
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Leptotrombidium deliense (Leptotrombidium deliense strain UoL-UT)
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Dinothrombium tinctorium (Dinothrombium tinctorium strain UoL-WK)
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Tetranychus urticae (Tetranychus urticae)
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Sarcoptes scabiei (SSS_KF_BRIS2020) (Sarcoptes scabiei strain SSS_KF_BRIS2020)
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Dermatophagoides pteronyssinus (airmid) - GCA_001901225.2 (Dermatophagoides pteronyssinus strain airmid)
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Centruroides sculpturatus (CEXI.00-Female) - GCA_000671375.2 (Centruroides sculpturatus strain CEXI.00-Female)
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Limulus polyphemus (Atlantic horseshoe crab) - GCA_000517525.1 (Limulus polyphemus)
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Orchesella cincta (Orchesella cincta)
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Folsomia candida str. VU population (Folsomia candida)
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Rhodnius prolixus (Rhodnius prolixus strain CDC)
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Cimex lectularius (Harlan) (Cimex lectularius strain Harlan)
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Diuraphis noxia (RWA2) - GCA_001186385.1 (Diuraphis noxia strain RWA2)
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Acyrthosiphon pisum (AL4f) (Acyrthosiphon pisum strain AL4f)
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Rhopalosiphum maidis (BTI-1) - GCA_003676215.3 (Rhopalosiphum maidis strain BTI-1)
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Sipha flava (LNK) - GCA_003268045.1 (Sipha flava strain LNK)
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Trialeurodes vaporariorum (IVF) (Trialeurodes vaporariorum strain IVF)
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Pediculus humanus (Pediculus humanus corporis strain USDA)
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Musca domestica (Musca domestica strain aabys)
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Stomoxys calcitrans (Stomoxys calcitrans strain USDA)
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Glossina palpalis (Glossina palpalis gambiensis strain IAEA)
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Glossina fuscipes (IAEA_lab_2018) (Glossina fuscipes strain IAEA_lab_2018)
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Glossina pallidipes (Glossina pallidipes strain IAEA)
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Glossina morsitans (Glossina morsitans morsitans strain Yale)
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Glossina austeni (Glossina austeni strain TTRI)
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Glossina brevipalpis (Glossina brevipalpis strain IAEA)
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Lucilia cuprina (Lucilia cuprina strain LS)
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Bactrocera tryoni (Queensland fruitfly, S06) - GCA_016617805.2 (Bactrocera tryoni strain S06)
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Bactrocera dorsalis (Oriental fruit fly, Punador) - GCA_000789215.2 (Bactrocera dorsalis strain Punador)
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Ceratitis capitata (Mediterranean fruit fly) - GCA_000347755.4 (Ceratitis capitata)
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Rhagoletis pomonella (Grant_MI) - GCA_013731165.1 (Rhagoletis pomonella strain Grant_MI)
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Drosophila melanogaster (Drosophila melanogaster)
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Teleopsis dalmanni (2A) (Teleopsis dalmanni strain 2A)
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Megaselia scalaris (Megaselia scalaris)
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Hermetia illucens (Black soldier fly) - GCA_905115235.1 (Hermetia illucens)
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Culex quinquefasciatus (JHB) (Culex quinquefasciatus strain JHB)
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Culex quinquefasciatus (Culex quinquefasciatus strain Johannesburg)
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Aedes aegypti (LVP_AGWG) (Aedes aegypti strain LVP_AGWG)
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Aedes albopictus (Aedes albopictus strain Foshan)
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Anopheles albimanus (Anopheles albimanus strain STECLA)
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Anopheles darlingi (Anopheles darlingi strain Coari)
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Anopheles sinensis (Anopheles sinensis strain SINENSIS)
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Anopheles sinensis (China) (Anopheles sinensis strain China)
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Anopheles atroparvus (EBRE) - GCA_914969975.1 (Anopheles atroparvus strain Infravec2 EBRE)
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Anopheles farauti (Anopheles farauti strain FAR1)
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Anopheles dirus (Anopheles dirus strain WRAIR2)
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Anopheles stephensi (Indian) (Anopheles stephensi strain Indian)
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Anopheles stephensi (Anopheles stephensi strain SDA-500)
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Anopheles maculatus (Anopheles maculatus strain maculatus3)
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Anopheles funestus (Anopheles funestus strain FUMOZ)
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Anopheles culicifacies (Anopheles culicifacies strain A-37)
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Anopheles minimus (Anopheles minimus strain MINIMUS1)
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Anopheles coluzzii (Ngousso) (Anopheles coluzzii strain Ngousso)
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Anopheles coluzzii (Anopheles coluzzii strain Mali-NIH)
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Anopheles quadriannulatus (Anopheles quadriannulatus strain SANGWE)
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Anopheles arabiensis (Anopheles arabiensis strain Dongola)
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Anopheles merus (Anopheles merus strain MAF)
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Anopheles melas (Anopheles melas strain CM1001059_A)
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Anopheles gambiae (Anopheles gambiae strain PEST)
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Anopheles epiroticus (Anopheles epiroticus strain Epiroticus2)
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Anopheles christyi (Anopheles christyi strain ACHKN1017)
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Culicoides sonorensis (Culicoides sonorensis)
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Belgica antarctica (Belgica antarctica)
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Phlebotomus papatasi (Phlebotomus papatasi strain Israel)
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Phlebotomus perniciosus (Murcia) - GCA_918844115.1 (Phlebotomus perniciosus strain Murcia)
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Lutzomyia longipalpis (Lutzomyia longipalpis strain Jacobina)
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Mayetiola destructor (Mayetiola destructor strain Kansas Great Plain)
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Melitaea cinxia (Melitaea cinxia)
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Heliconius melpomene (Heliconius melpomene)
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Danaus plexippus plexippus (F-2) (Danaus plexippus plexippus strain F-2)
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Bombyx mori (p50T) (Bombyx mori strain p50T)
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Cotesia glomerata (CgM1) - GCA_020080835.1 (Cotesia glomerata strain CgM1)
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Aphidius gifuensis (Parasitoid wasp, YNYX2018) - GCA_014905175.1 (Aphidius gifuensis strain YNYX2018)
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Nasonia vitripennis (AsymCx) (Nasonia vitripennis strain AsymCx)
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Copidosoma floridanum (CFLO.00-Male) - GCA_000648655.2 (Copidosoma floridanum strain CFLO.00-Male)
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Trichogramma pretiosum (Unisexual culture from Peru) - GCA_000599845.3 (Trichogramma pretiosum strain Unisexual culture from Peru)
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Bombus terrestris (Bombus terrestris)
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Bombus impatiens (Bombus impatiens)
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Apis mellifera (DH4) (Apis mellifera strain DH4)
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Monomorium pharaonis (Pharaoh ant, MP-MQ-018) - GCA_013373865.2 (Monomorium pharaonis strain MP-MQ-018)
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Solenopsis invicta (M01_SB) (Solenopsis invicta strain M01_SB)
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Atta cephalotes (Atta cephalotes)
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Ooceraea biroi (Clonal raider ant, clonal line C1) - GCA_003672135.1 (Ooceraea biroi strain clonal line C1)
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Orussus abietinus (Parasitic wood wasp, OABI.00-Male) - GCA_000612105.2 (Orussus abietinus strain OABI.00-Male)
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Leptinotarsa decemlineata (Colorado potato beetle, Imidocloprid resistant) - GCA_000500325.2 (Leptinotarsa decemlineata strain Imidocloprid resistant)
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Diabrotica virgifera virgifera (Ped12-6-A-3) - GCA_003013835.2 (Diabrotica virgifera virgifera strain Ped12-6-A-3)
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Anoplophora glabripennis (ALB-LARVAE) (Anoplophora glabripennis strain ALB-LARVAE)
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Dendroctonus ponderosae (Mountain pine beetle) - GCA_000355655.1 (Dendroctonus ponderosae)
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Tribolium castaneum (Tribolium castaneum strain Georgia GA2)
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Agrilus planipennis (Emerald ash borer, EAB-ADULT) - GCA_000699045.2 (Agrilus planipennis strain EAB-ADULT)
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Zootermopsis nevadensis (Zootermopsis nevadensis)
-
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Daphnia magna (Fresh water planktonic, NIES) - GCA_020631705.2 (Daphnia magna strain NIES)
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Daphnia pulex (Daphnia pulex)
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Amphibalanus amphitrite (Acorn barnacle, SeventyFive) - GCA_019059575.1 (Amphibalanus amphitrite strain SeventyFive)
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Pollicipes pollicipes (Goose neck barnacle, AB1234) - GCA_011947565.2 (Pollicipes pollicipes strain AB1234)
-------------------------------
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Lepeophtheirus salmonis (Lepeophtheirus salmonis)
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Tigriopus californicus (San Diego) (Tigriopus californicus strain San Diego)
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Eurytemora affinis (Calanoid copepod, Atlantic clade) - GCA_000591075.2 (Eurytemora affinis strain Atlantic clade)
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Homarus americanus (American lobster, GMGI-L3) - GCA_018991925.1 (Homarus americanus strain GMGI-L3)
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Procambarus clarkii (Red swamp crayfish, Jiangsu) - GCA_020424385.2 (Procambarus clarkii strain Jiangsu)
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Portunus trituberculatus (Swimming crab, SZX2019) - GCA_017591435.1 (Portunus trituberculatus strain SZX2019)
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Penaeus monodon (SGIC_2016) - GCA_015228065.1 (Penaeus monodon strain SGIC_2016)
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Penaeus vannamei (Pacific white shrimp) - GCA_003789085.1 (Penaeus vannamei)
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Penaeus japonicus (Kuruma shrimp, Ginoza2017) - GCA_017312705.1 (Penaeus japonicus strain Ginoza2017)
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Hyalella azteca (Amphipod, HAZT.00-mixed) - GCA_000764305.2 (Hyalella azteca strain HAZT.00-mixed)
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Strigamia maritima (Strigamia maritima)
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Hypsibius exemplaris (Water bear tardigrade, Z151) - GCA_002082055.1 (Hypsibius exemplaris strain Z151)
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Caenorhabditis japonica (PRJNA12591) (Caenorhabditis japonica)
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Caenorhabditis brenneri (PRJNA20035) (Caenorhabditis brenneri)
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Caenorhabditis briggsae (PRJNA10731) (Caenorhabditis briggsae)
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Caenorhabditis elegans (PRJNA13758) (Caenorhabditis elegans strain N2)
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Caenorhabditis remanei (PRJNA53967) (Caenorhabditis remanei)
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Pristionchus pacificus (PRJNA12644) (Pristionchus pacificus strain PS312)
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Brugia malayi (PRJNA10729) (Brugia malayi strain FR3)
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Loa loa (Loa loa strain Cameroon SouthWest Province isolate)
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Onchocerca volvulus (PRJEB513) (Onchocerca volvulus strain O. volvulus Cameroon isolate)
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Ascaris suum (PRJNA62057) (Ascaris suum strain AG01)
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Strongyloides ratti (PRJEB125) (Strongyloides ratti)
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Necator americanus (PRJNA72135) (Necator americanus strain N. amaericanus Hunan isolate)
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Trichinella spiralis (Trichinella spiralis strain ISS_195)
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Trichuris muris (PRJEB126) (Trichuris muris)
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Priapulus caudatus (Penis worm) - GCA_000485595.2 (Priapulus caudatus)
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Strongylocentrotus purpuratus (Spur 01) (Strongylocentrotus purpuratus strain Spur 01)
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Lytechinus variegatus (Green sea urchin, NC3) - GCA_018143015.1 (Lytechinus variegatus strain NC3)
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Acanthaster planci (Crown-of-thorns starfish) - GCA_001949145.1 (Acanthaster planci)
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Patiria miniata (Bat star starfish, m_02_andy) - GCA_015706575.1 (Patiria miniata strain m_02_andy)
-----------------------
Asterias rubens (European starfish) - GCA_902459465.3 (Asterias rubens)
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Anneissia japonica (Sea lily, Jap-2015-1) - GCA_011630105.1 (Anneissia japonica strain Jap-2015-1)
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Saccoglossus kowalevskii (Acorn worm) - GCA_000003605.1 (Saccoglossus kowalevskii)
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Branchiostoma lanceolatum (Branchiostoma lanceolatum)
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Hofstenia miamia (Hofstenia miamia strain MS-H3)
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Mnemiopsis leidyi (Mnemiopsis leidyi)
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Trichoplax adhaerens (Trichoplax adhaerens strain Grell-BS-1999)
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Amphimedon queenslandica (Amphimedon queenslandica)