Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Size of the trees (per root node)
| Species | # Trees | % Trees | # Genes | % Genes | Min # genes | Max # genes | Average # genes | Min # species | Max # species | Average # species | Average # genes per species |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Animals (Metazoa) | 8786 | 1125044 | 2 | 6890 | 128.1 | 2 | 73 | 45.2 | 1.8 | ||
| Heteroscleromorpha | 586 | 2191 | 2 | 40 | 3.7 | 2 | 2 | 2.0 | 1.9 | ||
| Halichondria panicea (Sponges) - GCF_963675165.1 [RefSeq annotation] (Halichondria panicea) | 507 | 2879 | 2 | 52 | 5.7 | 1 | 1 | 1.0 | 5.7 | ||
| Amphimedon queenslandica (Demosponge) (Amphimedon queenslandica) | 766 | 4610 | 2 | 49 | 6.0 | 1 | 1 | 1.0 | 6.0 | ||
| Eumetazoa | 9207 | 328031 | 2 | 4944 | 35.6 | 2 | 70 | 14.1 | 1.9 | ||
| Bilateral animals (Bilateria) | 3847 | 60523 | 2 | 1124 | 15.7 | 2 | 59 | 8.9 | 1.5 | ||
| Deuterostomes (Deuterostomia) | 463 | 3165 | 2 | 373 | 6.8 | 2 | 8 | 3.8 | 1.7 | ||
| Saccoglossus kowalevskii (Acorn worm) (Saccoglossus kowalevskii) | 263 | 1074 | 2 | 42 | 4.1 | 1 | 1 | 1.0 | 4.1 | ||
| Branchiostoma lanceolatum (Amphioxus) (Branchiostoma lanceolatum) | 1400 | 5228 | 2 | 44 | 3.7 | 1 | 1 | 1.0 | 3.7 | ||
| Echinoderms (Echinodermata) | 271 | 1750 | 2 | 53 | 6.5 | 2 | 6 | 3.9 | 1.6 | ||
| Eleutherozoa | 205 | 1166 | 2 | 40 | 5.7 | 2 | 5 | 3.8 | 1.4 | ||
| Echinacea | 1161 | 7273 | 2 | 382 | 6.3 | 2 | 3 | 2.7 | 2.2 | ||
| Strongylocentrotus purpuratus (Purple sea urchin, Spur 01) (Strongylocentrotus purpuratus strain Spur 01) | 183 | 710 | 2 | 30 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Lytechinus | 250 | 1028 | 2 | 41 | 4.1 | 2 | 2 | 2.0 | 2.1 | ||
| Lytechinus variegatus (Green sea urchin, NC3) (Lytechinus variegatus strain NC3) | 64 | 249 | 2 | 28 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Lytechinus pictus (Painted urchin, DCL-2020) (Lytechinus pictus strain DCL-2020) | 92 | 226 | 2 | 12 | 2.5 | 1 | 1 | 1.0 | 2.5 | ||
| Starfish (Asteroidea) | 289 | 827 | 2 | 20 | 2.9 | 2 | 2 | 2.0 | 1.4 | ||
| Acanthaster planci (Crown-of-thorns starfish) (Acanthaster planci) | 118 | 395 | 2 | 29 | 3.3 | 1 | 1 | 1.0 | 3.3 | ||
| Asterias rubens (European starfish) (Asterias rubens) | 39 | 124 | 2 | 15 | 3.2 | 1 | 1 | 1.0 | 3.2 | ||
| Anneissia japonica (Sea lily, Jap-2015-1) (Anneissia japonica strain Jap-2015-1) | 436 | 1971 | 2 | 45 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Protostomia | 3912 | 33351 | 2 | 1305 | 8.5 | 2 | 48 | 4.9 | 1.5 | ||
| Arthropods and nematodes (Ecdysozoa) | 391 | 6281 | 2 | 1064 | 16.1 | 2 | 33 | 5.4 | 1.5 | ||
| Rhabditida | 1212 | 3474 | 2 | 61 | 2.9 | 2 | 2 | 2.0 | 1.4 | ||
| Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2) | 1200 | 6408 | 2 | 283 | 5.3 | 1 | 1 | 1.0 | 4.7 | ||
| Loa loa (Eye worm, Cameroon SouthWest Province isolate) (Loa loa strain Cameroon SouthWest Province isolate) | 350 | 1137 | 2 | 33 | 3.2 | 1 | 1 | 1.0 | 3.2 | ||
| Gordionus sp. m RMFG-2023 (Horsehair worms) - GCF_954871325.1 [RefSeq annotation] (Gordionus sp. m RMFG-2023) | 166 | 947 | 2 | 31 | 5.7 | 1 | 1 | 1.0 | 5.7 | ||
| Panarthropoda | 144 | 3125 | 2 | 577 | 21.7 | 2 | 29 | 7.8 | 1.8 | ||
| Arthropods (Arthropoda) | 646 | 21515 | 2 | 3131 | 33.3 | 2 | 27 | 8.6 | 1.8 | ||
| Chelicerates (Chelicerata) | 137 | 601 | 2 | 43 | 4.4 | 2 | 2 | 2.0 | 2.2 | ||
| Ixodes scapularis (Black-legged tick, PalLabHiFi) (Ixodes scapularis strain PalLabHiFi) | 692 | 6222 | 2 | 56 | 9.0 | 1 | 1 | 1.0 | 9.0 | ||
| Limulus polyphemus (Atlantic horseshoe crab) (Limulus polyphemus) | 334 | 927 | 2 | 13 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Mandibulates (Mandibulata) | 170 | 1536 | 2 | 123 | 9.0 | 2 | 23 | 5.8 | 1.4 | ||
| Pancrustacea | 642 | 9924 | 2 | 1036 | 15.5 | 2 | 24 | 8.0 | 1.6 | ||
| Crustaceans (Crustacea) | 149 | 2995 | 2 | 1464 | 20.1 | 2 | 16 | 6.8 | 2.1 | ||
| Multicrustacea | 584 | 4076 | 2 | 43 | 7.0 | 2 | 13 | 4.5 | 1.5 | ||
| Thoracicalcarea | 952 | 4491 | 2 | 42 | 4.7 | 2 | 2 | 2.0 | 2.4 | ||
| Amphibalanus amphitrite (Acorn barnacle, SeventyFive) (Amphibalanus amphitrite strain SeventyFive) | 629 | 2204 | 2 | 47 | 3.5 | 1 | 1 | 1.0 | 3.5 | ||
| Pollicipes pollicipes (Goose neck barnacle, AB1234) (Pollicipes pollicipes strain AB1234) | 226 | 615 | 2 | 12 | 2.7 | 1 | 1 | 1.0 | 2.7 | ||
| Neocopepoda | 826 | 3450 | 2 | 46 | 4.2 | 2 | 3 | 2.5 | 1.6 | ||
| Podoplea | 293 | 741 | 2 | 19 | 2.5 | 2 | 2 | 2.0 | 1.3 | ||
| Lepeophtheirus salmonis (Salmon louse, Lsal2020) (Lepeophtheirus salmonis strain Lsal2020) | 190 | 1028 | 2 | 42 | 5.4 | 1 | 1 | 1.0 | 5.4 | ||
| Tigriopus californicus (Copepod, San Diego) (Tigriopus californicus strain San Diego) | 297 | 1063 | 2 | 23 | 3.6 | 1 | 1 | 1.0 | 3.6 | ||
| Eurytemora carolleeae (Crustaceans) - GCF_000591075.1 [RefSeq annotation] (Eurytemora carolleeae) | 431 | 1519 | 2 | 31 | 3.5 | 1 | 1 | 1.0 | 3.5 | ||
| Eumalacostraca | 889 | 8168 | 2 | 57 | 9.2 | 2 | 9 | 5.8 | 1.5 | ||
| Decapoda | 2099 | 16224 | 2 | 49 | 7.7 | 2 | 8 | 4.9 | 1.5 | ||
| Pleocyemata | 194 | 1231 | 2 | 46 | 6.3 | 2 | 4 | 2.9 | 2.1 | ||
| True lobsters and crayfishes (Astacidea) | 438 | 1722 | 2 | 50 | 3.9 | 2 | 3 | 2.4 | 1.6 | ||
| Homarus | 497 | 1755 | 2 | 52 | 3.5 | 2 | 2 | 2.0 | 1.8 | ||
| Homarus americanus (American lobster, GMGI-L3) (Homarus americanus strain GMGI-L3) | 258 | 883 | 2 | 23 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Homarus gammarus (European lobster, reference) (Homarus gammarus reference strain) | 336 | 1712 | 2 | 32 | 5.1 | 1 | 1 | 1.0 | 5.1 | ||
| Procambarus clarkii (Red swamp crayfish, Jiangsu) (Procambarus clarkii strain Jiangsu) | 497 | 1948 | 2 | 43 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Portunus trituberculatus (Swimming crab, SZX2019) (Portunus trituberculatus strain SZX2019) | 191 | 790 | 2 | 23 | 4.1 | 1 | 1 | 1.0 | 4.1 | ||
| Penaeus | 1683 | 9191 | 2 | 49 | 5.5 | 2 | 4 | 2.8 | 1.8 | ||
| Penaeus monodon (Black tiger shrimp, SGIC_2016) (Penaeus monodon strain SGIC_2016) | 116 | 306 | 2 | 9 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Penaeus vannamei (Pacific white shrimp) (Penaeus vannamei) | 140 | 344 | 2 | 9 | 2.5 | 1 | 1 | 1.0 | 2.5 | ||
| Penaeus chinensis (Fleshy prawn) (Penaeus chinensis) | 43 | 112 | 2 | 11 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Penaeus japonicus (Kuruma shrimp, Ginoza2017) (Penaeus japonicus strain Ginoza2017) | 87 | 269 | 2 | 17 | 3.1 | 1 | 1 | 1.0 | 3.1 | ||
| Hyalella azteca (Amphipod, HAZT.00-mixed) (Hyalella azteca strain HAZT.00-mixed) | 397 | 1712 | 2 | 45 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Common water fleas (Daphnia) | 1611 | 7742 | 2 | 46 | 4.8 | 2 | 3 | 2.6 | 1.8 | ||
| Daphnia pulex (Common water flea, KAP4) (Daphnia pulex strain KAP4) | 29 | 79 | 2 | 12 | 2.7 | 1 | 1 | 1.0 | 2.7 | ||
| Daphnia magna (Fresh water planktonic, NIES) (Daphnia magna strain NIES) | 227 | 998 | 2 | 32 | 4.4 | 1 | 1 | 1.0 | 4.4 | ||
| Daphnia pulicaria (Water flea, SC F1-1A) (Daphnia pulicaria strain SC F1-1A) | 63 | 188 | 2 | 13 | 3.0 | 1 | 1 | 1.0 | 3.0 | ||
| Neoptera | 492 | 3957 | 2 | 290 | 8.0 | 2 | 7 | 4.8 | 1.4 | ||
| Halyomorpha halys (Brown marmorated stink bug, HHAL.00) (Halyomorpha halys strain HHAL.00) | 230 | 903 | 2 | 39 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Endopterygota | 617 | 2927 | 2 | 45 | 4.7 | 2 | 6 | 3.5 | 1.3 | ||
| Flies (Diptera) | 321 | 946 | 2 | 56 | 2.9 | 2 | 2 | 2.0 | 1.4 | ||
| Anopheles darlingi (American malaria mosquito) - GCA_943734745.1 (Anopheles darlingi) | 90 | 319 | 2 | 17 | 3.5 | 1 | 1 | 1.0 | 3.5 | ||
| Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster) | 301 | 870 | 2 | 23 | 2.9 | 1 | 1 | 1.0 | 2.9 | ||
| Ditrysia | 1233 | 3782 | 2 | 44 | 3.1 | 2 | 2 | 2.0 | 1.5 | ||
| Spodoptera frugiperda (Fall armyworm, SF20-4) (Spodoptera frugiperda strain SF20-4) | 108 | 446 | 2 | 21 | 4.1 | 1 | 1 | 1.0 | 4.1 | ||
| Cydia pomonella (The codling moth, Wapato2018A) - GCF_033807575.1 [RefSeq annotation] (Cydia pomonella isolate Wapato2018A) | 196 | 794 | 2 | 32 | 4.1 | 1 | 1 | 1.0 | 4.1 | ||
| Tribolium madens (Black flour beetle, multiple individuals) (Tribolium madens strain multiple individuals) | 156 | 536 | 2 | 30 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Apis dorsata (Giant honeybee) (Apis dorsata) | 24 | 126 | 2 | 22 | 5.2 | 1 | 1 | 1.0 | 5.2 | ||
| Strigamia maritima (Soil centipede) (Strigamia maritima) | 410 | 1746 | 2 | 36 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Parachela | 1507 | 5460 | 2 | 51 | 3.6 | 2 | 2 | 2.0 | 1.8 | ||
| Paramacrobiotus metropolitanus (Water bear tardigrade, TYO) (Paramacrobiotus metropolitanus strain TYO) | 779 | 4932 | 2 | 53 | 6.3 | 1 | 1 | 1.0 | 6.3 | ||
| Hypsibius exemplaris (Water bear tardigrade, Z151) (Hypsibius exemplaris strain Z151) | 744 | 3275 | 2 | 39 | 4.4 | 1 | 1 | 1.0 | 4.4 | ||
| Priapulus caudatus (Penis worm) (Priapulus caudatus) | 188 | 540 | 2 | 26 | 2.9 | 1 | 1 | 1.0 | 2.9 | ||
| Spiralia | 237 | 1401 | 2 | 50 | 5.9 | 2 | 15 | 2.9 | 2.1 | ||
| Lophotrochozoa | 1192 | 8239 | 2 | 49 | 6.9 | 2 | 15 | 4.5 | 1.6 | ||
| Segmented worms (Annelida) | 85 | 293 | 2 | 22 | 3.4 | 2 | 3 | 2.1 | 1.6 | ||
| Helobdella robusta (Freshwater leech) (Helobdella robusta) | 784 | 4537 | 2 | 53 | 5.8 | 1 | 1 | 1.0 | 5.8 | ||
| Polychaetes (Polychaeta) | 25 | 92 | 2 | 10 | 3.7 | 2 | 2 | 2.0 | 1.8 | ||
| Dimorphilus gyrociliatus (Segmented worms) (Dimorphilus gyrociliatus) | 282 | 1176 | 2 | 37 | 4.2 | 1 | 1 | 1.0 | 4.2 | ||
| Owenia fusiformis (Segmented worms) (Owenia fusiformis) | 1363 | 6026 | 2 | 46 | 4.4 | 1 | 1 | 1.0 | 4.4 | ||
| Pomphorhynchus laevis (Thorny-headed worm, GPI110) (Pomphorhynchus laevis strain GPI110) | 830 | 3274 | 2 | 40 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Flatworms (Platyhelminthes) | 410 | 995 | 2 | 17 | 2.4 | 2 | 2 | 2.0 | 1.2 | ||
| Echinococcus granulosus (Dog tapeworm) (Echinococcus granulosus) | 256 | 705 | 2 | 16 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Schistosoma mansoni (Flatworm) (Schistosoma mansoni) | 220 | 702 | 2 | 22 | 3.2 | 1 | 1 | 1.0 | 3.2 | ||
| Molluscs (Mollusca) | 892 | 6578 | 2 | 44 | 7.4 | 2 | 8 | 4.4 | 1.7 | ||
| Octopus bimaculoides (California two-spot octopus, UCB-OBI-ISO-001) (Octopus bimaculoides strain UCB-OBI-ISO-001) | 202 | 765 | 2 | 24 | 3.8 | 1 | 1 | 1.0 | 3.8 | ||
| Pteriomorphia | 404 | 1959 | 2 | 44 | 4.8 | 2 | 2 | 2.0 | 2.4 | ||
| Magallana gigas (Bivalves) - GCF_963853765.1 [RefSeq annotation] (Magallana gigas) | 623 | 3118 | 2 | 49 | 5.0 | 1 | 1 | 1.0 | 5.0 | ||
| Mizuhopecten yessoensis (Yesso scallop, PY_sf001) (Mizuhopecten yessoensis strain PY_sf001) | 459 | 1986 | 2 | 44 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Gastropods (Gastropoda) | 902 | 5493 | 2 | 41 | 6.1 | 2 | 5 | 3.0 | 2.0 | ||
| Biomphalaria glabrata (Bloodfluke planorb) - GCA_947242115.1 (Biomphalaria glabrata) | 579 | 3276 | 2 | 56 | 5.7 | 1 | 1 | 1.0 | 5.7 | ||
| Gigantopelta aegis (Deep sea snail, Gae_Host) (Gigantopelta aegis strain Gae_Host) | 344 | 1548 | 2 | 33 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Haliotis | 1342 | 7183 | 2 | 43 | 5.4 | 2 | 2 | 2.0 | 2.7 | ||
| Haliotis rufescens (Red abalone, VD_foot) (Haliotis rufescens strain VD_foot) | 221 | 847 | 2 | 28 | 3.8 | 1 | 1 | 1.0 | 3.8 | ||
| Haliotis rubra (Blacklip abalone, DU_JTF1) (Haliotis rubra strain DU_JTF1) | 169 | 445 | 2 | 13 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Lottia gigantea (Owl limpet) (Lottia gigantea) | 623 | 3434 | 2 | 57 | 5.5 | 1 | 1 | 1.0 | 5.5 | ||
| Lingula anatina (Lamp shell, Amm_Jpn) (Lingula anatina strain Amm_Jpn) | 681 | 2515 | 2 | 45 | 3.7 | 1 | 1 | 1.0 | 3.7 | ||
| Lineus longissimus (Bootlace worm, reference) (Lineus longissimus reference strain) | 560 | 1897 | 2 | 49 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Adineta vaga (Rotifer) (Adineta vaga) | 3924 | 13457 | 2 | 52 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Hofstenia miamia (Panther worm, MS-H3) (Hofstenia miamia strain MS-H3) | 1552 | 6431 | 2 | 49 | 4.1 | 1 | 1 | 1.0 | 4.1 | ||
| Mnemiopsis leidyi (Warty comb jelly) (Mnemiopsis leidyi) | 670 | 3000 | 2 | 41 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Cnidarians (Cnidaria) | 499 | 4889 | 2 | 54 | 9.8 | 2 | 10 | 4.9 | 2.1 | ||
| Anthozoans (Anthozoa) | 573 | 6161 | 2 | 50 | 10.8 | 2 | 7 | 4.3 | 2.5 | ||
| Hexacorallia | 1378 | 10064 | 2 | 49 | 7.3 | 2 | 6 | 3.5 | 2.0 | ||
| Sea anemones (Actiniaria) | 518 | 2584 | 2 | 44 | 5.0 | 2 | 3 | 2.1 | 2.3 | ||
| Nematostella vectensis (Starlet sea anemone, CH2 x CH6) (Nematostella vectensis strain CH2 x CH6) | 379 | 1145 | 2 | 25 | 3.0 | 1 | 1 | 1.0 | 3.0 | ||
| Actinia equina (Beadlet anemone, AE1) (Actinia equina strain AE1) | 1779 | 7113 | 2 | 41 | 4.0 | 1 | 1 | 1.0 | 4.0 | ||
| Exaiptasia diaphana (Sea anemone, CC7) (Exaiptasia diaphana strain CC7) | 85 | 222 | 2 | 10 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Stony corals (Scleractinia) | 903 | 4691 | 2 | 48 | 5.2 | 2 | 3 | 2.5 | 2.1 | ||
| Astrocoeniina | 126 | 529 | 2 | 33 | 4.2 | 2 | 2 | 2.0 | 2.1 | ||
| Acropora millepora (Stony coral, JS-1) (Acropora millepora strain JS-1) | 263 | 1374 | 2 | 52 | 5.2 | 1 | 1 | 1.0 | 5.2 | ||
| Stylophora pistillata (Hood coral, CSM Monaco) (Stylophora pistillata strain CSM Monaco) | 158 | 484 | 2 | 19 | 3.1 | 1 | 1 | 1.0 | 3.1 | ||
| Orbicella faveolata (Mountainous star coral, FL) (Orbicella faveolata strain FL) | 203 | 492 | 2 | 9 | 2.4 | 1 | 1 | 1.0 | 2.4 | ||
| Dendronephthya gigantea (Carnation coral, DGI-Jeju-01) (Dendronephthya gigantea strain DGI-Jeju-01) | 398 | 1861 | 2 | 45 | 4.7 | 1 | 1 | 1.0 | 4.7 | ||
| Hydroidolina | 600 | 2259 | 2 | 45 | 3.8 | 2 | 2 | 2.0 | 1.9 | ||
| Clytia hemisphaerica (Jellyfish, Z4C2) (Clytia hemisphaerica strain Z4C2) | 831 | 3293 | 2 | 47 | 4.0 | 1 | 1 | 1.0 | 4.0 | ||
| Hydra vulgaris (Swiftwater hydra, 105) (Hydra vulgaris strain 105) | 518 | 3541 | 2 | 46 | 6.8 | 1 | 1 | 1.0 | 6.8 | ||
| Thelohanellus kitauei (Myxozoan endoparasite) (Thelohanellus kitauei) | 1220 | 5880 | 2 | 49 | 4.8 | 1 | 1 | 1.0 | 4.8 | ||
| Trichoplax adhaerens (Placozoa, Grell-BS-1999) (Trichoplax adhaerens strain Grell-BS-1999) | 162 | 570 | 2 | 28 | 3.5 | 1 | 1 | 1.0 | 3.5 |
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