Apis mellifera (Honey bee, DH4) vs Solenopsis invicta (Red fire ant, M01_SB) Synteny results

The syntenic regions between Apis mellifera (Honey bee, DH4) (Apis mellifera, Amel_HAv3.1) and Solenopsis invicta (Red fire ant, M01_SB) (Solenopsis invicta, UNIL_Sinv_3.0) were extracted from their pairwise alignment in Ensembl Metazoa release 106. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 287 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Apis mellifera (Honey bee, DH4)

Uncovered: 83,490,922 out of 225,250,884
Covered: 141,759,962 out of 225,250,884

Uncovered: 10,075,285 out of 18,346,913
Covered: 8,271,628 out of 18,346,913

Solenopsis invicta (Red fire ant, M01_SB)

Uncovered: 208,630,488 out of 378,101,515
Covered: 169,471,027 out of 378,101,515

Uncovered: 14,356,210 out of 24,708,769
Covered: 10,352,559 out of 24,708,769