40 pangenome_drosophila Cactus
This alignment has been generated in Ensembl Metazoa release 59.
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HAL configuration
| Species | Assembly | Genome length (bp) | Genome coverage (bp) | Genome coverage (%) |
|---|---|---|---|---|
| Drosophila melanogaster (Fruit fly) (Drosophila melanogaster) | BDGP6.46 | 143,726,002 | 110,761,635 | 77.06 |
| Drosophila mauritiana (Fruit fly, mau12) (Drosophila mauritiana) | ASM438214v1 | 152,313,266 | 118,171,891 | 77.58 |
| Drosophila simulans (Fruit fly, w501) (Drosophila simulans) | Prin_Dsim_3.1 | 131,663,590 | 117,541,019 | 89.27 |
| Drosophila sechellia (Fruit fly, sech25) (Drosophila sechellia) | ASM438219v2 | 153,084,571 | 118,203,949 | 77.21 |
| Drosophila teissieri (Fruit fly, GT53w) (Drosophila teissieri) | Prin_Dtei_1.1 | 149,494,471 | 114,780,018 | 76.78 |
| Drosophila yakuba (Fruit fly, Tai18E2) (Drosophila yakuba) | Prin_Dyak_Tai18E2_2.1 | 147,899,117 | 119,035,725 | 80.48 |
| Drosophila santomea (Fruit fly, STO CAGO 1482) (Drosophila santomea) | Prin_Dsan_1.1 | 146,800,522 | 118,612,415 | 80.80 |
| Drosophila erecta (Fruit fly, 14021-0224.00,06,07) (Drosophila erecta) | DereRS2 | 146,538,397 | 109,327,023 | 74.61 |
| Drosophila eugracilis (Fruit fly, 14026-0451.02) (Drosophila eugracilis) | ASM1815383v1 | 164,811,307 | 105,741,116 | 64.16 |
| Drosophila takahashii (Fruit fly, IR98-3 E-12201) (Drosophila takahashii) | ASM1815269v1 | 165,528,346 | 114,845,183 | 69.38 |
| Drosophila biarmipes (Fruit fly, raj3) (Drosophila biarmipes) | RU_DBia_V1.1 | 193,597,863 | 118,716,775 | 61.32 |
| Drosophila subpulchrella (Fruit fly, 33 F10 #4) (Drosophila subpulchrella) | RU_Dsub_v1.1 | 265,153,789 | 133,105,373 | 50.20 |
| Drosophila suzukii (Fruit fly, WT3_2.0) (Drosophila suzukii) | LBDM_Dsuz_2.1.pri | 268,012,156 | 137,491,699 | 51.30 |
| Drosophila rhopaloa (Fruit fly, 14029-0021.01) (Drosophila rhopaloa) | ASM1815211v1 | 193,508,231 | 117,747,968 | 60.85 |
| Drosophila gunungcola (Fruit fly, Sukarami) (Drosophila gunungcola) | Dgunungcola_SK_2 | 189,841,955 | 133,785,003 | 70.47 |
| Drosophila elegans (Fruit fly) (Drosophila elegans) | Dele_2.0 | 171,267,669 | 133,654,862 | 78.04 |
| Drosophila ficusphila (Fruit fly, 14025-0441.05) (Drosophila ficusphila) | ASM1815226v1 | 167,832,931 | 108,386,315 | 64.58 |
| Drosophila kikkawai (Fruit fly, 14028-0561.14) (Drosophila kikkawai) | ASM1815253v1 | 188,799,863 | 102,156,909 | 54.11 |
| Drosophila ananassae (Fruit fly, 14024-0371.13) (Drosophila ananassae) | ASM1763931v2 | 213,817,545 | 106,562,203 | 49.84 |
| Drosophila bipectinata (Fruit fly) (Drosophila bipectinata) | Dbip_2.0 | 167,263,958 | 104,946,562 | 62.74 |
| Drosophila miranda (Fruit fly, MSH22) (Drosophila miranda) | D.miranda_PacBio2.1 | 287,096,000 | 143,580,152 | 50.01 |
| Drosophila persimilis (Fruit fly, 14011-0111.01,24,50) (Drosophila persimilis) | DperRS2 | 195,512,972 | 139,250,665 | 71.22 |
| Drosophila pseudoobscura (Fruit fly, MV2-25) (Drosophila pseudoobscura) | UCI_Dpse_MV25 | 163,282,969 | 137,870,646 | 84.44 |
| Drosophila guanche (Fruit fly) (Drosophila guanche) | DGUA_6 | 140,632,981 | 111,938,666 | 79.60 |
| Drosophila subobscura (Fruit fly, 14011-0131.10) (Drosophila subobscura) | UCBerk_Dsub_1.0 | 126,248,017 | 114,892,187 | 91.01 |
| Drosophila obscura (Fruit fly, BZ-5 IFL) (Drosophila obscura) | ASM1815110v1 | 179,834,232 | 114,624,599 | 63.74 |
| Drosophila willistoni (Fruit fly, 14030-0811.24) (Drosophila willistoni) | UCI_dwil_1.1 | 246,985,538 | 61,057,358 | 24.72 |
| Drosophila grimshawi (Fruit fly, 15287-2541.00) (Drosophila grimshawi) | ASM1815329v1 | 191,382,978 | 91,288,729 | 47.70 |
| Drosophila hydei (Fruit fly, 15085-1641.00,03,60) (Drosophila hydei) | DhydRS2 | 153,741,574 | 122,638,669 | 79.77 |
| Drosophila arizonae (Fruit fly, ariz_Son04) (Drosophila arizonae) | ASM165402v1 | 141,386,800 | 126,431,128 | 89.42 |
| Drosophila mojavensis (Fruit fly, 15081-1352.22) (Drosophila mojavensis) | ASM1815372v1 | 163,170,721 | 137,451,122 | 84.24 |
| Drosophila navojoa (Fruit fly, navoj_Jal97) (Drosophila navojoa) | UFRJ_Dnav_4.2 | 147,357,603 | 133,134,853 | 90.35 |
| Drosophila virilis (Fruit fly, 15010-1051.48,49,85) (Drosophila virilis) | DvirRS2 | 189,443,829 | 103,870,217 | 54.83 |
| Drosophila albomicans (Fruit fly, 15112-1751.03) (Drosophila albomicans) | ASM965048v2 | 167,525,814 | 99,574,076 | 59.44 |
| Drosophila innubila (Fruit fly, TH190305) (Drosophila innubila) | UK_Dinn_1.0 | 167,978,031 | 100,592,509 | 59.88 |
| Drosophila busckii (Fruit fly, San Diego stock center stock number 13000-0081.31) (Drosophila busckii) | ASM1175060v1 | 118,492,362 | 70,408,290 | 59.42 |
| Coremacera marginata (Sieve-winged Snailkiller, reference) (Coremacera marginata) | idCorMarg1.1 | 979,662,365 | 47,567,352 | 4.86 |
| Myopa tessellatipennis (Thick-headed flies, reference) (Myopa tessellatipennis) | idMyoTess1.1 | 249,257,482 | 44,486,061 | 17.85 |
| Machimus atricapillus (Kite-tailed Robberfly, reference) (Machimus atricapillus) | idMacAtri3.1 | 268,627,744 | 20,948,084 | 7.80 |
| Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton) (Bactrocera neohumeralis) | APGP_CSIRO_Bneo_wtdbg2_racon_allhic_juicebox.fasta_v2 | 577,342,536 | 28,053,230 | 4.86 |
Cactus coverage calculation
Cactus coverage values are obtained from the output of halAlignmentDepth (Hickey et al. 2013), then aggregated per genome.
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