In this section

40 pangenome_drosophila Cactus

This alignment has been generated in Ensembl Metazoa release 60 and is composed of 1,490,123 blocks (up to 10,418 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "CACTUS_DB" and the species_set_name "collection-pangenome_drosophila".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)BDGP6.46143,726,002119,308,20783.0122,955,69422,647,77398.66
Drosophila sechellia (Fruit fly, sech25) (Drosophila sechellia)ASM438219v2153,084,571104,332,02168.1523,087,94221,337,08792.42
Drosophila mauritiana (Fruit fly, mau12) (Drosophila mauritiana)ASM438214v1152,313,266104,468,74068.5922,941,18721,312,09892.90
Drosophila simulans (Fruit fly, w501) (Drosophila simulans)Prin_Dsim_3.1131,663,590104,619,01979.4623,238,24321,426,52892.20
Drosophila erecta (Fruit fly, 14021-0224.00,06,07) (Drosophila erecta)DereRS2146,538,397101,379,99669.1822,591,37221,052,38293.19
Drosophila santomea (Fruit fly, STO CAGO 1482) (Drosophila santomea)Prin_Dsan_1.1146,800,522102,147,34769.5823,158,08921,147,31091.32
Drosophila yakuba (Fruit fly, Tai18E2) (Drosophila yakuba)Prin_Dyak_Tai18E2_2.1147,899,117102,176,17269.0923,334,52421,224,91590.96
Drosophila teissieri (Fruit fly, GT53w) (Drosophila teissieri)Prin_Dtei_1.1149,494,471102,783,71868.7523,459,55721,083,74689.87
Drosophila eugracilis (Fruit fly, 14026-0451.02) (Drosophila eugracilis)ASM1815383v1164,811,30798,526,97359.7823,108,52820,746,42389.78
Drosophila takahashii (Fruit fly, IR98-3 E-12201) (Drosophila takahashii)ASM1815269v1165,528,34697,687,93159.0223,643,73220,509,73486.74
Drosophila suzukii (Fruit fly, WT3_2.0) (Drosophila suzukii)LBDM_Dsuz_2.1.pri268,012,15698,351,94036.7024,645,29420,740,20884.15
Drosophila subpulchrella (Fruit fly, 33 F10 #4) (Drosophila subpulchrella)RU_Dsub_v1.1265,153,78998,382,30637.1023,997,91320,764,36486.53
Drosophila biarmipes (Fruit fly, raj3) (Drosophila biarmipes)RU_DBia_V1.1193,597,86396,903,42750.0523,514,10720,802,84588.47
Drosophila rhopaloa (Fruit fly, 14029-0021.01) (Drosophila rhopaloa)ASM1815211v1193,508,23196,781,67150.0123,825,93220,611,28386.51
Drosophila elegans (Fruit fly) (Drosophila elegans)Dele_2.0171,267,66996,686,99056.4524,361,38320,474,82984.05
Drosophila gunungcola (Fruit fly, Sukarami) (Drosophila gunungcola)Dgunungcola_SK_2189,841,95596,544,28450.8623,000,69620,539,79789.30
Drosophila ficusphila (Fruit fly, 14025-0441.05) (Drosophila ficusphila)ASM1815226v1167,832,93195,278,18256.7723,377,93820,521,06987.78
Drosophila kikkawai (Fruit fly, 14028-0561.14) (Drosophila kikkawai)ASM1815253v1188,799,86389,355,60347.3324,134,08220,091,15483.25
Drosophila ananassae (Fruit fly, 14024-0371.13) (Drosophila ananassae)ASM1763931v2213,817,54583,535,82439.0724,452,74020,008,29181.82
Drosophila bipectinata (Fruit fly) (Drosophila bipectinata)Dbip_2.0167,263,95882,986,77949.6123,667,57419,730,11783.36
Drosophila guanche (Fruit fly) (Drosophila guanche)DGUA_6140,632,98174,851,75453.2222,462,85819,358,66886.18
Drosophila subobscura (Fruit fly, 14011-0131.10) (Drosophila subobscura)UCBerk_Dsub_1.0126,248,01776,083,79760.2722,568,56219,372,61985.84
Drosophila obscura (Fruit fly, BZ-5 IFL) (Drosophila obscura)ASM1815110v1179,834,23278,443,63443.6223,961,36819,408,84581.00
Drosophila pseudoobscura (Fruit fly, MV2-25) (Drosophila pseudoobscura)UCI_Dpse_MV25163,282,96976,822,58747.0523,940,10619,590,17381.83
Drosophila persimilis (Fruit fly, 14011-0111.01,24,50) (Drosophila persimilis)DperRS2195,512,97276,467,85539.1123,610,34919,238,83381.48
Drosophila miranda (Fruit fly, MSH22) (Drosophila miranda)D.miranda_PacBio2.1287,096,00076,820,29426.7629,313,61319,359,76766.04
Drosophila willistoni (Fruit fly, 14030-0811.24) (Drosophila willistoni)UCI_dwil_1.1246,985,53854,392,12722.0224,051,65118,507,43476.95
Drosophila hydei (Fruit fly, 15085-1641.00,03,60) (Drosophila hydei)DhydRS2153,741,57453,232,06734.6222,456,33018,004,79380.18
Drosophila navojoa (Fruit fly, navoj_Jal97) (Drosophila navojoa)UFRJ_Dnav_4.2147,357,60353,802,60236.5121,446,01717,955,06683.72
Drosophila arizonae (Fruit fly, ariz_Son04) (Drosophila arizonae)ASM165402v1141,386,80050,335,00235.6020,891,52017,311,73382.86
Drosophila mojavensis (Fruit fly, 15081-1352.22) (Drosophila mojavensis)ASM1815372v1163,170,72154,055,12133.1322,712,74018,224,50080.24
Drosophila virilis (Fruit fly, 15010-1051.48,49,85) (Drosophila virilis)DvirRS2189,443,82954,324,32928.6823,186,84518,364,46479.20
Drosophila grimshawi (Fruit fly, 15287-2541.00) (Drosophila grimshawi)ASM1815329v1191,382,97854,475,04528.4621,946,38318,058,84282.29
Drosophila albomicans (Fruit fly, 15112-1751.03) (Drosophila albomicans)ASM965048v2167,525,81455,429,88233.0923,632,62518,270,93577.31
Drosophila innubila (Fruit fly, TH190305) (Drosophila innubila)UK_Dinn_1.0167,978,03154,702,52232.5722,417,96518,055,00280.54
Drosophila busckii (Fruit fly, San Diego stock center stock number 13000-0081.31) (Drosophila busckii)ASM1175060v1118,492,36251,873,68243.7821,064,81917,622,69983.66
Coremacera marginata (Sieve-winged Snailkiller, reference) (Coremacera marginata)idCorMarg1.1979,662,36514,966,8331.5322,145,38711,789,00453.23
Myopa tessellatipennis (Thick-headed flies, reference) (Myopa tessellatipennis)idMyoTess1.1249,257,48214,686,4805.8920,550,01311,692,17856.90
Machimus atricapillus (Kite-tailed Robberfly, reference) (Machimus atricapillus)idMacAtri3.1268,627,74413,018,5224.8518,227,5049,988,45354.80
Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton) (Bactrocera neohumeralis)APGP_CSIRO_Bneo_wtdbg2_racon_allhic_juicebox.fasta_v2577,342,53617,143,2652.9724,088,79513,283,65455.14

Block size distribution

Size range All 1,490,123 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
826,877
43.1 Mb
100 bp - 1 kb
658,554
148.3 Mb
1 kb - 10 kb
4,555
11.5 Mb
10 kb - 100 kb
137
1.4 Mb