Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Actinia equina (AE1) - GCA_011057435.1 (Actinia equina strain AE1)
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Nematostella vectensis (Nematostella vectensis strain CH2 x CH6)
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Clytia hemisphaerica (Z4C2) (Clytia hemisphaerica strain Z4C2)
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Thelohanellus kitauei (Thelohanellus kitauei)
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Loa loa (Loa loa strain Cameroon SouthWest Province isolate)
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Brugia malayi (PRJNA10729) (Brugia malayi strain FR3)
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Onchocerca volvulus (PRJEB513) (Onchocerca volvulus strain O. volvulus Cameroon isolate)
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Ascaris suum (PRJNA62057) (Ascaris suum strain AG01)
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Caenorhabditis elegans (PRJNA13758) (Caenorhabditis elegans strain N2)
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Caenorhabditis brenneri (PRJNA20035) (Caenorhabditis brenneri)
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Caenorhabditis briggsae (PRJNA10731) (Caenorhabditis briggsae)
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Caenorhabditis remanei (PRJNA53967) (Caenorhabditis remanei)
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Caenorhabditis japonica (PRJNA12591) (Caenorhabditis japonica)
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Pristionchus pacificus (PRJNA12644) (Pristionchus pacificus strain PS312)
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Strongyloides ratti (PRJEB125) (Strongyloides ratti)
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Necator americanus (PRJNA72135) (Necator americanus strain N. amaericanus Hunan isolate)
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Trichinella spiralis (Trichinella spiralis strain ISS_195)
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Trichuris muris (PRJEB126) (Trichuris muris)
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Orchesella cincta (Orchesella cincta)
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Folsomia candida str. VU population (Folsomia candida)
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Trialeurodes vaporariorum (IVF) (Trialeurodes vaporariorum strain IVF)
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Acyrthosiphon pisum (AL4f) (Acyrthosiphon pisum strain AL4f)
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Cimex lectularius (Harlan) (Cimex lectularius strain Harlan)
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Rhodnius prolixus (Rhodnius prolixus strain CDC)
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Pediculus humanus (Pediculus humanus corporis strain USDA)
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Drosophila mojavensis (TSC#15081-1352.22) (Drosophila mojavensis strain TSC#15081-1352.22)
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Drosophila virilis (TSC#15010-1051.87) (Drosophila virilis strain TSC#15010-1051.87)
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Drosophila melanogaster (Drosophila melanogaster)
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Drosophila simulans (w501) (Drosophila simulans strain w501)
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Drosophila sechellia (Rob3c) (Drosophila sechellia strain Rob3c)
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Drosophila erecta (TSC#14021-0224.01) (Drosophila erecta strain TSC#14021-0224.01)
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Drosophila yakuba (Tai18E2) (Drosophila yakuba strain Tai18E2)
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Drosophila ananassae (TSC#14024-0371.13) (Drosophila ananassae strain TSC#14024-0371.13)
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Drosophila pseudoobscura pseudoobscura (MV2-25) (Drosophila pseudoobscura pseudoobscura strain MV2-25)
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Drosophila persimilis (MSH-3) (Drosophila persimilis strain MSH-3)
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Drosophila willistoni (TSC#14030-0811.24) (Drosophila willistoni strain TSC#14030-0811.24)
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Drosophila grimshawi (TSC#15287-2541.00) (Drosophila grimshawi strain TSC#15287-2541.00)
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Teleopsis dalmanni (2A) (Teleopsis dalmanni strain 2A)
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Stomoxys calcitrans (Stomoxys calcitrans strain USDA)
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Musca domestica (Musca domestica strain aabys)
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Glossina palpalis (Glossina palpalis gambiensis strain IAEA)
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Glossina fuscipes (IAEA_lab_2018) (Glossina fuscipes strain IAEA_lab_2018)
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Glossina pallidipes (Glossina pallidipes strain IAEA)
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Glossina austeni (Glossina austeni strain TTRI)
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Glossina morsitans (Glossina morsitans morsitans strain Yale)
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Glossina brevipalpis (Glossina brevipalpis strain IAEA)
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Lucilia cuprina (Lucilia cuprina strain LS)
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Megaselia scalaris (Megaselia scalaris)
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Lutzomyia longipalpis (Lutzomyia longipalpis strain Jacobina)
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Phlebotomus papatasi (Phlebotomus papatasi strain Israel)
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Culex quinquefasciatus (Culex quinquefasciatus strain Johannesburg)
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Culex quinquefasciatus (JHB) (Culex quinquefasciatus strain JHB)
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Aedes albopictus (Aedes albopictus strain Foshan)
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Aedes aegypti (LVP_AGWG) (Aedes aegypti strain LVP_AGWG)
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Anopheles albimanus (Anopheles albimanus strain STECLA)
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Anopheles darlingi (Anopheles darlingi strain Coari)
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Anopheles sinensis (China) (Anopheles sinensis strain China)
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Anopheles sinensis (Anopheles sinensis strain SINENSIS)
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Anopheles atroparvus (Anopheles atroparvus strain EBRO)
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Anopheles dirus (Anopheles dirus strain WRAIR2)
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Anopheles farauti (Anopheles farauti strain FAR1)
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Anopheles stephensi (Indian) (Anopheles stephensi strain Indian)
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Anopheles stephensi (Anopheles stephensi strain SDA-500)
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Anopheles maculatus (Anopheles maculatus strain maculatus3)
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Anopheles culicifacies (Anopheles culicifacies strain A-37)
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Anopheles funestus (Anopheles funestus strain FUMOZ)
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Anopheles minimus (Anopheles minimus strain MINIMUS1)
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Anopheles coluzzii (Ngousso) (Anopheles coluzzii strain Ngousso)
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Anopheles coluzzii (Anopheles coluzzii strain Mali-NIH)
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Anopheles quadriannulatus (Anopheles quadriannulatus strain SANGWE)
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Anopheles arabiensis (Anopheles arabiensis strain Dongola)
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Anopheles merus (Anopheles merus strain MAF)
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Anopheles melas (Anopheles melas strain CM1001059_A)
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Anopheles gambiae (Anopheles gambiae strain PEST)
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Anopheles epiroticus (Anopheles epiroticus strain Epiroticus2)
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Anopheles christyi (Anopheles christyi strain ACHKN1017)
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Culicoides sonorensis (Culicoides sonorensis)
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Belgica antarctica (Belgica antarctica)
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Mayetiola destructor (Mayetiola destructor strain Kansas Great Plain)
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Danaus plexippus plexippus (F-2) (Danaus plexippus plexippus strain F-2)
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Heliconius melpomene (Heliconius melpomene)
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Melitaea cinxia (Melitaea cinxia)
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Bombyx mori (p50T) (Bombyx mori strain p50T)
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Bombus terrestris (Bombus terrestris)
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Bombus impatiens (Bombus impatiens)
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Apis mellifera (DH4) (Apis mellifera strain DH4)
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Solenopsis invicta (M01_SB) (Solenopsis invicta strain M01_SB)
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Atta cephalotes (Atta cephalotes)
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Nasonia vitripennis (AsymCx) (Nasonia vitripennis strain AsymCx)
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Tribolium castaneum (Tribolium castaneum strain Georgia GA2)
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Anoplophora glabripennis (ALB-LARVAE) (Anoplophora glabripennis strain ALB-LARVAE)
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Dendroctonus ponderosae (Dendroctonus ponderosae)
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Zootermopsis nevadensis (Zootermopsis nevadensis)
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Tigriopus californicus (San Diego) (Tigriopus californicus strain San Diego)
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Lepeophtheirus salmonis (Lepeophtheirus salmonis)
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Daphnia magna (Daphnia magna)
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Daphnia pulex (Daphnia pulex)
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Strigamia maritima (Strigamia maritima)
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Ixodes scapularis (Ixodes scapularis strain Wikel)
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Ixodes scapularis (PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)
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Rhipicephalus microplus (Rmic-2018) (Rhipicephalus microplus strain Rmic-2018)
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Rhipicephalus sanguineus (Rsan-2018) (Rhipicephalus sanguineus strain Rsan-2018)
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Dermacentor silvarum (Dsil-2018) (Dermacentor silvarum strain Dsil-2018)
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Varroa destructor (Varroa destructor)
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Dinothrombium tinctorium (Dinothrombium tinctorium strain UoL-WK)
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Leptotrombidium deliense (Leptotrombidium deliense strain UoL-UT)
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Tetranychus urticae (Tetranychus urticae)
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Sarcoptes scabiei (SSS_KF_BRIS2020) (Sarcoptes scabiei strain SSS_KF_BRIS2020)
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Stegodyphus mimosarum (Stegodyphus mimosarum)
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Schistosoma mansoni (PRJEA36577) (Schistosoma mansoni)
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Hymenolepis microstoma (PRJEB124) (Hymenolepis microstoma)
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Helobdella robusta (Helobdella robusta)
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Capitella teleta (Capitella teleta)
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Lottia gigantea (Lottia gigantea)
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Biomphalaria glabrata (Biomphalaria glabrata strain BB02)
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Crassostrea gigas (Crassostrea gigas)
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Octopus bimaculoides (Octopus bimaculoides)
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Lingula anatina (Lingula anatina)
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Adineta vaga (Adineta vaga)
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Strongylocentrotus purpuratus (Spur 01) (Strongylocentrotus purpuratus strain Spur 01)
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Branchiostoma lanceolatum (Branchiostoma lanceolatum)
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Hofstenia miamia (Hofstenia miamia strain MS-H3)
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Trichoplax adhaerens (Trichoplax adhaerens strain Grell-BS-1999)
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Mnemiopsis leidyi (Mnemiopsis leidyi)
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Amphimedon queenslandica (Amphimedon queenslandica)