Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Hydra vulgaris (Swiftwater hydra, 105) - GCA_022113875.1 (Hydra vulgaris strain 105)
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Clytia hemisphaerica (Z4C2) (Clytia hemisphaerica strain Z4C2)
-------
-
Pocillopora damicornis (RSMAS) - GCA_003704095.1 (Pocillopora damicornis strain RSMAS)
-------
----
Stylophora pistillata (CSM Monaco) - GCA_002571385.1 (Stylophora pistillata strain CSM Monaco)
-------
--------
Acropora millepora (Stony coral, JS-1) - GCA_013753865.1 (Acropora millepora strain JS-1)
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-
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Orbicella faveolata (Mountainous star coral, FL) - GCA_002042975.1 (Orbicella faveolata strain FL)
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-
Actinia tenebrosa (Australian red waratah sea anemone) - GCA_009602425.1 (Actinia tenebrosa)
--------------
----
Actinia equina (AE1) - GCA_011057435.1 (Actinia equina strain AE1)
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Exaiptasia diaphana (Sea anemone, CC7) - GCA_001417965.1 (Exaiptasia diaphana strain CC7)
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Nematostella vectensis (Nematostella vectensis strain CH2 x CH6)
-----------------------
Thelohanellus kitauei (Thelohanellus kitauei)
-------------------
-
Lingula anatina (Lamp shell (Brachiopod), Amm_Jpn) - GCA_001039355.2 (Lingula anatina strain Amm_Jpn)
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Lingula anatina (Lingula anatina LinAna1.0)
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-
Owenia fusiformis (Segmented worms) - GCA_903813345.1 (Owenia fusiformis)
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Capitella teleta (Capitella teleta)
-----------
--------
Dimorphilus gyrociliatus (Segmented worms) - GCA_904063045.1 (Dimorphilus gyrociliatus)
------------------
Helobdella robusta (Helobdella robusta)
-------
-------------
-
Schistosoma mansoni (PRJEA36577) (Schistosoma mansoni)
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Hymenolepis microstoma (PRJEB124) (Hymenolepis microstoma)
-------------
-
Crassostrea gigas (Pacific oyster) - GCA_902806645.1 (Crassostrea gigas)
-------------
----
Crassostrea virginica (RU13XGHG1-28) - GCA_002022765.4 (Crassostrea virginica strain RU13XGHG1-28)
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Mizuhopecten yessoensis (Yesso scallop, PY_sf001) - GCA_002113885.2 (Mizuhopecten yessoensis strain PY_sf001)
------------------------
Mercenaria mercenaria (Hard clam (quahog), YKG-2019) - GCA_014805675.2 (Mercenaria mercenaria strain YKG-2019)
----------------
-
Octopus bimaculoides (Octopus bimaculoides PRJNA270931)
---------------------------------------------------
----
-----
----
Octopus bimaculoides (Octopus, UCB-OBI-ISO-001) - GCA_001194135.1 (Octopus bimaculoides strain UCB-OBI-ISO-001)
--------------------
Octopus sinensis (East Asian common octopus) - GCA_006345805.1 (Octopus sinensis)
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-
Aplysia californica (California sea hare, F4 #8) - GCA_000002075.2 (Aplysia californica strain F4 #8)
-------------------
Biomphalaria glabrata (Biomphalaria glabrata strain BB02)
-----------------
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Pomacea canaliculata (SZHN2017) - GCA_003073045.1 (Pomacea canaliculata strain SZHN2017)
-----------------
Gigantopelta aegis (Deep sea snail, Gae_Host) - GCA_016097555.1 (Gigantopelta aegis strain Gae_Host)
-----------------
Lottia gigantea (Lottia gigantea)
------------------------------
Adineta vaga (Adineta vaga)
--------------------------------------------------
-
Folsomia candida str. VU population (Folsomia candida)
-------------
Orchesella cincta (Orchesella cincta)
-------------
-
Acyrthosiphon pisum (AL4f) (Acyrthosiphon pisum strain AL4f)
-------------
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Diuraphis noxia (RWA2) - GCA_001186385.1 (Diuraphis noxia strain RWA2)
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Rhopalosiphum maidis (BTI-1) - GCA_003676215.3 (Rhopalosiphum maidis strain BTI-1)
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Sipha flava (LNK) - GCA_003268045.1 (Sipha flava strain LNK)
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Trialeurodes vaporariorum (IVF) (Trialeurodes vaporariorum strain IVF)
-----------------------------
----------------
-
Rhodnius prolixus (Rhodnius prolixus strain CDC)
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Cimex lectularius (Harlan) (Cimex lectularius strain Harlan)
------------------------------------
Pediculus humanus (Pediculus humanus corporis strain USDA)
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-
Diabrotica virgifera virgifera (Ped12-6-A-3) - GCA_003013835.2 (Diabrotica virgifera virgifera strain Ped12-6-A-3)
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Leptinotarsa decemlineata (Colorado potato beetle, Imidocloprid resistant) - GCA_000500325.2 (Leptinotarsa decemlineata strain Imidocloprid resistant)
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Anoplophora glabripennis (ALB-LARVAE) (Anoplophora glabripennis strain ALB-LARVAE)
------------------------------------
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Dendroctonus ponderosae (Mountain pine beetle) - GCA_000355655.1 (Dendroctonus ponderosae)
------------------------------
Tribolium castaneum (Tribolium castaneum strain Georgia GA2)
-------------------------------
Agrilus planipennis (Emerald ash borer, EAB-ADULT) - GCA_000699045.2 (Agrilus planipennis strain EAB-ADULT)
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-
Bactrocera tryoni (Queensland fruitfly, S06) - GCA_016617805.2 (Bactrocera tryoni strain S06)
-------------------
----
Bactrocera dorsalis (Oriental fruit fly, Punador) - GCA_000789215.2 (Bactrocera dorsalis strain Punador)
-------------------
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Ceratitis capitata (Mediterranean fruit fly) - GCA_000347755.4 (Ceratitis capitata)
-------------------
------------
Rhagoletis pomonella (Grant_MI) - GCA_013731165.1 (Rhagoletis pomonella strain Grant_MI)
----------------------------------
Teleopsis dalmanni (2A) (Teleopsis dalmanni strain 2A)
----------------------------------
Drosophila melanogaster (Drosophila melanogaster)
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----------
--------
-
Musca domestica (Musca domestica strain aabys)
-------------------------------
Stomoxys calcitrans (Stomoxys calcitrans strain USDA)
-------------------------------
-
Glossina fuscipes (IAEA_lab_2018) (Glossina fuscipes strain IAEA_lab_2018)
----------------------------------
Glossina palpalis (Glossina palpalis gambiensis strain IAEA)
----------------------
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-
----
Glossina pallidipes (Glossina pallidipes strain IAEA)
-------------------------------
-
Glossina austeni (Glossina austeni strain TTRI)
----------------------------------
Glossina morsitans (Glossina morsitans morsitans strain Yale)
--------------------------
--------------
Glossina brevipalpis (Glossina brevipalpis strain IAEA)
---------------------------------------
Lucilia cuprina (Lucilia cuprina strain LS)
------------------------------------------------
Megaselia scalaris (Megaselia scalaris)
-------------------------------------------------
Hermetia illucens (Black soldier fly) - GCA_905115235.1 (Hermetia illucens)
-------------------------
-
Phlebotomus papatasi (Phlebotomus papatasi strain Israel)
---------------------------------------------
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Phlebotomus perniciosus (Murcia) - GCA_918844115.1 (Phlebotomus perniciosus strain Murcia)
--------------------------------
Lutzomyia longipalpis (Lutzomyia longipalpis strain Jacobina)
------------------------------------------------
-
Culicoides sonorensis (Culicoides sonorensis)
-------------------------------
Belgica antarctica (Belgica antarctica)
-------------------------------
-
Culex quinquefasciatus (Culex quinquefasciatus strain Johannesburg)
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----
----------------
----
Culex quinquefasciatus (JHB) (Culex quinquefasciatus strain JHB)
----------------------------------
-
Aedes albopictus (Aedes albopictus strain Foshan)
----------------------------------
Aedes aegypti (LVP_AGWG) (Aedes aegypti strain LVP_AGWG)
----------------------------------------------
-
Anopheles darlingi (Anopheles darlingi strain Coari)
----------------------------
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Anopheles albimanus (Anopheles albimanus strain STECLA)
-------------
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-
Anopheles sinensis (China) (Anopheles sinensis strain China)
------------------------------------
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Anopheles sinensis (Anopheles sinensis strain SINENSIS)
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Anopheles atroparvus (EBRE) - GCA_914969975.1 (Anopheles atroparvus strain Infravec2 EBRE)
-------------------------------
-
Anopheles stephensi (Anopheles stephensi strain SDA-500)
-------------------------
--------
----
Anopheles stephensi (Indian) (Anopheles stephensi strain Indian)
-------------------
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Anopheles maculatus (Anopheles maculatus strain maculatus3)
---------------------------------
-
Anopheles dirus (Anopheles dirus strain WRAIR2)
----------------------------
Anopheles farauti (Anopheles farauti strain FAR1)
----------------------------
-
Anopheles coluzzii (Ngousso) (Anopheles coluzzii strain Ngousso)
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-------------------------
Anopheles coluzzii (Anopheles coluzzii strain Mali-NIH)
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Anopheles gambiae (Anopheles gambiae strain PEST)
----------------------------
----
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Anopheles melas (Anopheles melas strain CM1001059_A)
----
-----------------------------------
Anopheles merus (Anopheles merus strain MAF)
-------------------------------
--------
Anopheles quadriannulatus (Anopheles quadriannulatus strain SANGWE)
-----------------------------------------
Anopheles arabiensis (Anopheles arabiensis strain Dongola)
------------------------------------------
Anopheles epiroticus (Anopheles epiroticus strain Epiroticus2)
------------------------------------------
Anopheles christyi (Anopheles christyi strain ACHKN1017)
----------------------------------
Anopheles minimus (Anopheles minimus strain MINIMUS1)
---------------------------------------
-
Anopheles culicifacies (Anopheles culicifacies strain A-37)
-------------------------------
Anopheles funestus (Anopheles funestus strain FUMOZ)
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Mayetiola destructor (Mayetiola destructor strain Kansas Great Plain)
----------------------------
-
Monomorium pharaonis (Pharaoh ant, MP-MQ-018) - GCA_013373865.2 (Monomorium pharaonis strain MP-MQ-018)
----------------------------
----
Solenopsis invicta (M01_SB) (Solenopsis invicta strain M01_SB)
----------------------------
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Atta cephalotes (Atta cephalotes)
----------------------------
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Ooceraea biroi (Clonal raider ant, clonal line C1) - GCA_003672135.1 (Ooceraea biroi strain clonal line C1)
----------------------------------
-
Bombus terrestris (Bombus terrestris)
----------------------------
--------
----
Bombus impatiens (Bombus impatiens)
--------------------------------------
Apis mellifera (DH4) (Apis mellifera strain DH4)
----------------------------------
-
Aphidius gifuensis (Parasitoid wasp, YNYX2018) - GCA_014905175.1 (Aphidius gifuensis strain YNYX2018)
-------------------------------------
------------
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Cotesia glomerata (CgM1) - GCA_020080835.1 (Cotesia glomerata strain CgM1)
----------------------------------
Copidosoma floridanum (CFLO.00-Male) - GCA_000648655.2 (Copidosoma floridanum strain CFLO.00-Male)
----------------
----------------
-
Nasonia vitripennis (AsymCx) (Nasonia vitripennis strain AsymCx)
----------------------------------
Trichogramma pretiosum (Unisexual culture from Peru) - GCA_000599845.3 (Trichogramma pretiosum strain Unisexual culture from Peru)
---------------------------------------------------
Orussus abietinus (Parasitic wood wasp, OABI.00-Male) - GCA_000612105.2 (Orussus abietinus strain OABI.00-Male)
-------------------------------
Melitaea cinxia (Melitaea cinxia)
-------------------------------
-
Heliconius melpomene (Heliconius melpomene)
--------------------------------------------------------
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Danaus plexippus plexippus (F-2) (Danaus plexippus plexippus strain F-2)
--------------------------------
Bombyx mori (p50T) (Bombyx mori strain p50T)
-----------------------------------------------------------------
Zootermopsis nevadensis (Zootermopsis nevadensis)
-----------------------------------------
-
Daphnia magna (Fresh water planktonic, NIES) - GCA_020631705.2 (Daphnia magna strain NIES)
----------------------------
Daphnia pulex (Daphnia pulex)
----------------------------------------
-
Amphibalanus amphitrite (Acorn barnacle, SeventyFive) - GCA_019059575.1 (Amphibalanus amphitrite strain SeventyFive)
----------------------------------------------
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Pollicipes pollicipes (Goose neck barnacle, AB1234) - GCA_011947565.2 (Pollicipes pollicipes strain AB1234)
----------------------------
-
Homarus americanus (American lobster, GMGI-L3) - GCA_018991925.1 (Homarus americanus strain GMGI-L3)
----------------------------
----
Procambarus clarkii (Red swamp crayfish, Jiangsu) - GCA_020424385.2 (Procambarus clarkii strain Jiangsu)
----------------------------
--------
Portunus trituberculatus (Swimming crab, SZX2019) - GCA_017591435.1 (Portunus trituberculatus strain SZX2019)
----------------------
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Penaeus japonicus (Kuruma shrimp, Ginoza2017) - GCA_017312705.1 (Penaeus japonicus strain Ginoza2017)
----------------
-------
--------
-
Penaeus monodon (SGIC_2016) - GCA_015228065.1 (Penaeus monodon strain SGIC_2016)
-------------------------------
Penaeus vannamei (Pacific white shrimp) - GCA_003789085.1 (Penaeus vannamei)
----------------------------------------
Hyalella azteca (Amphipod, HAZT.00-mixed) - GCA_000764305.2 (Hyalella azteca strain HAZT.00-mixed)
----------------------------
-
Tigriopus californicus (San Diego) (Tigriopus californicus strain San Diego)
-------
------------------------
----
Lepeophtheirus salmonis (Lepeophtheirus salmonis)
-----------------------------
Eurytemora affinis (Calanoid copepod, Atlantic clade) - GCA_000591075.2 (Eurytemora affinis strain Atlantic clade)
--------------------------------------------------------------------------
Strigamia maritima (Strigamia maritima)
-
-----------------------------------
-
Parasteatoda tepidariorum (Goettingen) - GCA_000365465.3 (Parasteatoda tepidariorum strain Goettingen)
-------------------------
Stegodyphus mimosarum (Stegodyphus mimosarum)
-----------------------------
-
Ixodes scapularis (Ixodes scapularis strain Wikel)
-------------------------
----
Ixodes scapularis (PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)
----------------
----------------
-
Rhipicephalus microplus (Rmic-2018) (Rhipicephalus microplus strain Rmic-2018)
----------------------------
----
----
Rhipicephalus sanguineus (Rsan-2018) (Rhipicephalus sanguineus strain Rsan-2018)
-------------------------
--------------
Dermacentor silvarum (Dsil-2018) (Dermacentor silvarum strain Dsil-2018)
----------------------------
----------------
Varroa destructor (Varroa destructor)
--------------------------------------
-
Dermatophagoides pteronyssinus (airmid) - GCA_001901225.2 (Dermatophagoides pteronyssinus strain airmid)
-----------------------------------
----
Sarcoptes scabiei (SSS_KF_BRIS2020) (Sarcoptes scabiei strain SSS_KF_BRIS2020)
--------------------------------------------------
----------
-
Leptotrombidium deliense (Leptotrombidium deliense strain UoL-UT)
----------------------------
----
Dinothrombium tinctorium (Dinothrombium tinctorium strain UoL-WK)
--------------------------------
Tetranychus urticae (Tetranychus urticae)
---------------------------------------------
Centruroides sculpturatus (CEXI.00-Female) - GCA_000671375.2 (Centruroides sculpturatus strain CEXI.00-Female)
----------------------------------------------
Limulus polyphemus (Atlantic horseshoe crab) - GCA_000517525.1 (Limulus polyphemus)
-------------------------------------------------------------------------------
Hypsibius exemplaris (Water bear tardigrade, Z151) - GCA_002082055.1 (Hypsibius exemplaris strain Z151)
-------------------
Caenorhabditis remanei (PRJNA53967) (Caenorhabditis remanei)
-------------
----
Caenorhabditis brenneri (PRJNA20035) (Caenorhabditis brenneri)
----------------
-
Caenorhabditis briggsae (PRJNA10731) (Caenorhabditis briggsae)
----------------
----
Caenorhabditis japonica (PRJNA12591) (Caenorhabditis japonica)
----------------------
Caenorhabditis elegans (PRJNA13758) (Caenorhabditis elegans strain N2)
-----------------------
Pristionchus pacificus (PRJNA12644) (Pristionchus pacificus strain PS312)
----------------
----
Loa loa (Loa loa strain Cameroon SouthWest Province isolate)
----------------------
-
Onchocerca volvulus (PRJEB513) (Onchocerca volvulus strain O. volvulus Cameroon isolate)
----------------
----
----
Brugia malayi (PRJNA10729) (Brugia malayi strain FR3)
-----------------------------
Ascaris suum (PRJNA62057) (Ascaris suum strain AG01)
---------------------------------------------------------
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Strongyloides ratti (PRJEB125) (Strongyloides ratti)
-------------------------------
Necator americanus (PRJNA72135) (Necator americanus strain N. amaericanus Hunan isolate)
----------------------------
-
Trichuris muris (PRJEB126) (Trichuris muris)
----------------
Trichinella spiralis (Trichinella spiralis strain ISS_195)
-----------------------------------------------------------------------------
Priapulus caudatus (Penis worm) - GCA_000485595.2 (Priapulus caudatus)
-----------------
-
Strongylocentrotus purpuratus (Spur 01) (Strongylocentrotus purpuratus strain Spur 01)
-------------
----
Lytechinus variegatus (Green sea urchin, NC3) - GCA_018143015.1 (Lytechinus variegatus strain NC3)
-------------------
-
Acanthaster planci (Crown-of-thorns starfish) - GCA_001949145.1 (Acanthaster planci)
-------------
----
----
Patiria miniata (Bat star starfish, m_02_andy) - GCA_015706575.1 (Patiria miniata strain m_02_andy)
-----------------------
Asterias rubens (European starfish) - GCA_902459465.3 (Asterias rubens)
--------------------------------------------------------------
----------------
Anneissia japonica (Sea lily, Jap-2015-1) - GCA_011630105.1 (Anneissia japonica strain Jap-2015-1)
-----------------------------
Branchiostoma lanceolatum (Branchiostoma lanceolatum)
-----------------------------
Saccoglossus kowalevskii (Acorn worm) - GCA_000003605.1 (Saccoglossus kowalevskii)
----------------------------------------------------------------------------------
Hofstenia miamia (Hofstenia miamia strain MS-H3)
-----------------------------------------------------------------------------------
Mnemiopsis leidyi (Mnemiopsis leidyi)
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Trichoplax adhaerens (Trichoplax adhaerens strain Grell-BS-1999)
------------------------------------------------------------------------------------
Amphimedon queenslandica (Amphimedon queenslandica)