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In this section

Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Nematoda, Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Crustacea, Myriapoda, Chelicerata, Tardigrada, Priapulida, Acanthocephala, Annelida, Brachiopoda, Mollusca, Nemertea, Platyhelminthes, Rotifera, Echinodermata, Cephalochordata, Hemichordata, Acoelomorpha, Cnidaria, Ctenophora, Placozoa, Porifera, Metazoa

Favourite species

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)1998514559542655858974
5970000
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)1394311492245187010622
2279000

Nematoda

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Loa loa (Eye worm, Cameroon SouthWest Province isolate) (Loa loa strain Cameroon SouthWest Province isolate)149088662624611377525
1365000
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)1998514559542655858974
5970000

Coleoptera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Tribolium madens (Black flour beetle, multiple individuals) (Tribolium madens strain multiple individuals)1211711006111153610470
1589000

Diptera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Anopheles darlingi (American malaria mosquito) - GCA_943734745.1 (Anopheles darlingi)111991035484531910035
1388000
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)1394311492245187010622
2279000

Hemiptera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Halyomorpha halys (Brown marmorated stink bug, HHAL.00) (Halyomorpha halys strain HHAL.00)1354711771177690310868
2664000

Hymenoptera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Apis dorsata (Giant honeybee) (Apis dorsata)9935874811871268622
359000

Lepidoptera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Spodoptera frugiperda (Fall armyworm, SF20-4) (Spodoptera frugiperda strain SF20-4)145461381373344613367
2104000
Cydia pomonella (The codling moth, Wapato2018A) - GCF_033807575.1 [RefSeq annotation] (Cydia pomonella isolate Wapato2018A)164521560085279414806
3391000

Crustacea

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Amphibalanus amphitrite (Acorn barnacle, SeventyFive) (Amphibalanus amphitrite strain SeventyFive)2726826372896220424168
12829000
Homarus americanus (American lobster, GMGI-L3) (Homarus americanus strain GMGI-L3)2120019328187288318445
2427000
Hyalella azteca (Amphipod, HAZT.00-mixed) (Hyalella azteca strain HAZT.00-mixed)17829149432886170613237
3402000
Penaeus monodon (Black tiger shrimp, SGIC_2016) (Penaeus monodon strain SGIC_2016)1926817570169830617264
2669000
Daphnia pulex (Common water flea, KAP4) (Daphnia pulex strain KAP4)15266149902767914911
843000
Tigriopus californicus (Copepod, San Diego) (Tigriopus californicus strain San Diego)15577128272750106311764
1940000
Eurytemora carolleeae (Crustaceans) - GCF_000591075.1 [RefSeq annotation] (Eurytemora carolleeae)19382149164466151913397
3065000
Homarus gammarus (European lobster, reference) (Homarus gammarus reference strain)23223204752748171218763
2927000
Penaeus chinensis (Fleshy prawn) (Penaeus chinensis)1964018533110711218421
1604000
Daphnia magna (Fresh water planktonic, NIES) (Daphnia magna strain NIES)163331576257199814764
3564000
Pollicipes pollicipes (Goose neck barnacle, AB1234) (Pollicipes pollicipes strain AB1234)1917818128105061517513
6434000
Penaeus japonicus (Kuruma shrimp, Ginoza2017) (Penaeus japonicus strain Ginoza2017)2113019920121026919651
2704000
Penaeus vannamei (Pacific white shrimp) (Penaeus vannamei)2115118538261334418194
3166000
Procambarus clarkii (Red swamp crayfish, Jiangsu) (Procambarus clarkii strain Jiangsu)25776241641612194822216
6521000
Lepeophtheirus salmonis (Salmon louse, Lsal2020) (Lepeophtheirus salmonis strain Lsal2020)13748123661382102811338
2553000
Portunus trituberculatus (Swimming crab, SZX2019) (Portunus trituberculatus strain SZX2019)1614514790135579014000
2305000
Daphnia pulicaria (Water flea, SC F1-1A) (Daphnia pulicaria strain SC F1-1A)168371645538218816267
1709000

Myriapoda

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Strigamia maritima (Soil centipede) (Strigamia maritima)14992122032789174610457
3144000

Chelicerata

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Limulus polyphemus (Atlantic horseshoe crab) (Limulus polyphemus)2263620917171992719990
8727000
Ixodes scapularis (Black-legged tick, PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)26370248411529622218619
14070000

Tardigrada

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Hypsibius exemplaris (Water bear tardigrade, Z151) (Hypsibius exemplaris strain Z151)19912156204292327512345
4845000
Paramacrobiotus metropolitanus (Water bear tardigrade, TYO) (Paramacrobiotus metropolitanus strain TYO)20080182441836493213312
7526000

Priapulida

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Priapulus caudatus (Penis worm) (Priapulus caudatus)1378611783200354011243
1792000

Acanthocephala

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Pomphorhynchus laevis (Thorny-headed worm, GPI110) (Pomphorhynchus laevis strain GPI110)120438141390232744867
3370000

Annelida

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Helobdella robusta (Freshwater leech) (Helobdella robusta)23432170176415453712480
6376000
Dimorphilus gyrociliatus (Segmented worms) (Dimorphilus gyrociliatus)14030117292301117610553
2137000
Owenia fusiformis (Segmented worms) (Owenia fusiformis)31239255715668602619545
9900000

Brachiopoda

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Lingula anatina (Lamp shell, Amm_Jpn) (Lingula anatina strain Amm_Jpn)26158243691789251521854
9749000

Mollusca

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Magallana gigas (Bivalves) - GCF_963853765.1 [RefSeq annotation] (Magallana gigas)25932244101522311821292
8613000
Haliotis rubra (Blacklip abalone, DU_JTF1) (Haliotis rubra strain DU_JTF1)2850426899160544526454
5580000
Biomphalaria glabrata (Bloodfluke planorb) - GCA_947242115.1 (Biomphalaria glabrata)21972200371935327616761
6196000
Octopus bimaculoides (California two-spot octopus, UCB-OBI-ISO-001) (Octopus bimaculoides strain UCB-OBI-ISO-001)1565614039161776513274
2888000
Gigantopelta aegis (Deep sea snail, Gae_Host) (Gigantopelta aegis strain Gae_Host)22179208161363154819268
5004000
Lottia gigantea (Owl limpet) (Lottia gigantea)23340204652875343417031
5221000
Haliotis rufescens (Red abalone, VD_foot) (Haliotis rufescens strain VD_foot)3116329889127484729042
6684000
Mizuhopecten yessoensis (Yesso scallop, PY_sf001) (Mizuhopecten yessoensis strain PY_sf001)24474224502024198620464
5700000

Nemertea

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Lineus longissimus (Bootlace worm, reference) (Lineus longissimus reference strain)19782166103172189714713
3269000

Platyhelminthes

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Echinococcus granulosus (Dog tapeworm) (Echinococcus granulosus)11319690644137056201
917000
Schistosoma mansoni (Flatworm) (Schistosoma mansoni)10144836817767027666
1499000

Rotifera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Adineta vaga (Rotifer) (Adineta vaga)493004141978811345727962
27905000

Echinodermata

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Acanthaster planci (Crown-of-thorns starfish) (Acanthaster planci)164071568072739515285
2345000
Asterias rubens (European starfish) (Asterias rubens)140641370036412413576
1748000
Lytechinus variegatus (Green sea urchin, NC3) (Lytechinus variegatus strain NC3)224722209837424921849
4523000
Lytechinus pictus (Painted urchin, DCL-2020) (Lytechinus pictus strain DCL-2020)241232318893522622962
4834000
Strongylocentrotus purpuratus (Purple sea urchin, Spur 01) (Strongylocentrotus purpuratus strain Spur 01)269472632562271025615
9190000
Anneissia japonica (Sea lily, Jap-2015-1) (Anneissia japonica strain Jap-2015-1)20184184121772197116441
5228000

Cephalochordata

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Branchiostoma lanceolatum (Amphioxus) (Branchiostoma lanceolatum)35955294416514522824213
12972000

Hemichordata

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Saccoglossus kowalevskii (Acorn worm) (Saccoglossus kowalevskii)20561187801781107417706
4690000

Acoelomorpha

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Hofstenia miamia (Panther worm, MS-H3) (Hofstenia miamia strain MS-H3)22454175444910643111113
8001000

Cnidaria

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Actinia equina (Beadlet anemone, AE1) (Actinia equina strain AE1)47671414596212711334346
20513000
Dendronephthya gigantea (Carnation coral, DGI-Jeju-01) (Dendronephthya gigantea strain DGI-Jeju-01)21864206971167186118836
7802000
Stylophora pistillata (Hood coral, CSM Monaco) (Stylophora pistillata strain CSM Monaco)234452248496148422000
4447000
Clytia hemisphaerica (Jellyfish, Z4C2) (Clytia hemisphaerica strain Z4C2)19128164142714329313121
5251000
Orbicella faveolata (Mountainous star coral, FL) (Orbicella faveolata strain FL)2585824512134649224020
5351000
Thelohanellus kitauei (Myxozoan endoparasite) (Thelohanellus kitauei)150209298572258803418
5665000
Exaiptasia diaphana (Sea anemone, CC7) (Exaiptasia diaphana strain CC7)919485626322228340
1547000
Nematostella vectensis (Starlet sea anemone, CH2 x CH6) (Nematostella vectensis strain CH2 x CH6)24773225272246114521382
5725000
Acropora millepora (Stony coral, JS-1) (Acropora millepora strain JS-1)2960828817791137427443
10888000
Hydra vulgaris (Swiftwater hydra, 105) (Hydra vulgaris strain 105)20964198791085354116338
8969000

Ctenophora

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Mnemiopsis leidyi (Warty comb jelly) (Mnemiopsis leidyi)1605811264479430008264
3668000

Placozoa

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Trichoplax adhaerens (Placozoa, Grell-BS-1999) (Trichoplax adhaerens strain Grell-BS-1999)115201013413865709564
2230000

Porifera

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Amphimedon queenslandica (Demosponge) (Amphimedon queenslandica)20111184111700461013801
8426000
Halichondria panicea (Sponges) - GCF_963675165.1 [RefSeq annotation] (Halichondria panicea)17209160971112287913218
6719000

Metazoa

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Gordionus sp. m RMFG-2023 (Horsehair worms) - GCF_954871325.1 [RefSeq annotation] (Gordionus sp. m RMFG-2023)8316716511519476218
1902000