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Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overview
Gene tree coverage and Gene QC for each species
Size of gene trees (split by their root taxon)
Gene tree nodes, and the inference of speciation / duplication events

Gene tree coverage and Gene QC (per species)

Quick links: Nematoda, Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Dictyoptera, Orthoptera, Crustacea, Myriapoda, Chelicerata, Tardigrada, Priapulida, Acanthocephala, Annelida, Brachiopoda, Mollusca, Platyhelminthes, Rotifera, Echinodermata, Cephalochordata, Hemichordata, Acoelomorpha, Cnidaria, Ctenophora, Placozoa, Porifera

Favourite species

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)	19985	14559	5426	5578	8981		5972	0	0	0
Anopheles gambiae (African malaria mosquito, PEST) (Anopheles gambiae strain PEST)	13092	11831	1261	688	11143		2434	0	0	0
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)	13943	11516	2427	789	10727		2256	0	0	0
Apis mellifera (Honey bee, DH4) (Apis mellifera strain DH4)	9824	9566	258	17	9549		188	0	0	0

Nematoda

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Loa loa (Eye worm, Cameroon SouthWest Province isolate) (Loa loa strain Cameroon SouthWest Province isolate)	14908	8667	6241	1140	7527		1351	0	0	0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)	19985	14559	5426	5578	8981		5972	0	0	0

Coleoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Tribolium castaneum (Red flour beetle, Georgia GA2) (Tribolium castaneum strain Georgia GA2)	16590	12671	3919	1311	11360		2482	0	0	0

Diptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Anopheles gambiae (African malaria mosquito, PEST) (Anopheles gambiae strain PEST)	13092	11831	1261	688	11143		2434	0	0	0
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)	13943	11516	2427	789	10727		2256	0	0	0

Hemiptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Cimex lectularius (Bed bug, Harlan) (Cimex lectularius strain Harlan)	11906	10429	1477	604	9825		1250	0	0	0
Acyrthosiphon pisum (Pea aphid, AL4f) (Acyrthosiphon pisum strain AL4f)	17096	15133	1963	1942	13191		5406	0	0	0

Hymenoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Bombus terrestris (buff-tailed bumblebee, reference) (Bombus terrestris reference strain)	14435	11119	3316	458	10661		904	0	0	0
Bombus terrestris (Buff-tailed bumblebee) (Bombus terrestris Bter_1.0)	10581	10347	234	22	10325		142	0	0	0
Apis mellifera (Honey bee, DH4) (Apis mellifera strain DH4)	9824	9566	258	17	9549		188	0	0	0

Lepidoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Bombyx mori (Domestic silkworm, p50T) (Bombyx mori strain p50T)	13172	11578	1594	916	10662		2426	0	0	0

Dictyoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Zootermopsis nevadensis (Nevada dampwood termite) (Zootermopsis nevadensis)	14610	11287	3323	780	10507		1435	0	0	0

Orthoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Schistocerca americana (American grasshopper, TAMUIC-IGC-003095) (Schistocerca americana strain TAMUIC-IGC-003095)	17610	16146	1464	1548	14598		5164	0	0	0

Crustacea

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Amphibalanus amphitrite (Acorn barnacle, SeventyFive) (Amphibalanus amphitrite strain SeventyFive)	27268	26408	860	2292	24116		12920	0	0	0
Homarus americanus (American lobster, GMGI-L3) (Homarus americanus strain GMGI-L3)	21200	19340	1860	889	18451		2427	0	0	0
Hyalella azteca (Amphipod, HAZT.00-mixed) (Hyalella azteca strain HAZT.00-mixed)	17829	14963	2866	1708	13255		3378	0	0	0
Penaeus monodon (Black tiger shrimp, SGIC_2016) (Penaeus monodon strain SGIC_2016)	19268	17565	1703	303	17262		2670	0	0	0
Eurytemora affinis (Calanoid copepod, Atlantic clade) (Eurytemora affinis strain Atlantic clade)	19382	14911	4471	1533	13378		3112	0	0	0
Daphnia pulex (Common water flea, KAP4) (Daphnia pulex strain KAP4)	15266	14992	274	77	14915		847	0	0	0
Tigriopus californicus (Copepod, San Diego) (Tigriopus californicus strain San Diego)	15577	12837	2740	1066	11771		1926	0	0	0
Homarus gammarus (European lobster, reference) (Homarus gammarus reference strain)	23223	20493	2730	1697	18796		2919	0	0	0
Penaeus chinensis (Fleshy prawn) (Penaeus chinensis)	19640	18536	1104	111	18425		1626	0	0	0
Daphnia magna (Fresh water planktonic, NIES) (Daphnia magna strain NIES)	16333	15766	567	973	14793		3599	0	0	0
Pollicipes pollicipes (Goose neck barnacle, AB1234) (Pollicipes pollicipes strain AB1234)	19178	18133	1045	585	17548		6423	0	0	0
Penaeus japonicus (Kuruma shrimp, Ginoza2017) (Penaeus japonicus strain Ginoza2017)	21130	19912	1218	280	19632		2678	0	0	0
Penaeus vannamei (Pacific white shrimp) (Penaeus vannamei)	21151	18548	2603	340	18208		3139	0	0	0
Procambarus clarkii (Red swamp crayfish, Jiangsu) (Procambarus clarkii strain Jiangsu)	25776	24164	1612	1988	22176		6565	0	0	0
Lepeophtheirus salmonis (Salmon louse, Lsal2020) (Lepeophtheirus salmonis strain Lsal2020)	13748	12380	1368	1044	11336		2564	0	0	0
Portunus trituberculatus (Swimming crab, SZX2019) (Portunus trituberculatus strain SZX2019)	16145	14793	1352	777	14016		2272	0	0	0
Daphnia pulicaria (Water flea, SC F1-1A) (Daphnia pulicaria strain SC F1-1A)	16837	16452	385	183	16269		1734	0	0	0

Myriapoda

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Strigamia maritima (Soil centipede) (Strigamia maritima)	14992	12218	2774	1757	10461		3148	0	0	0

Chelicerata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Limulus polyphemus (Atlantic horseshoe crab) (Limulus polyphemus)	22636	20913	1723	946	19967		8677	0	0	0
Ixodes scapularis (Black-legged tick, PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)	26370	24853	1517	6280	18573		14005	0	0	0

Tardigrada

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Hypsibius exemplaris (Water bear tardigrade, Z151) (Hypsibius exemplaris strain Z151)	19912	15623	4289	3279	12344		4834	0	0	0
Paramacrobiotus metropolitanus (Water bear tardigrade, TYO) (Paramacrobiotus metropolitanus strain TYO)	20080	18241	1839	4952	13289		7480	0	0	0

Priapulida

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Priapulus caudatus (Penis worm) (Priapulus caudatus)	13786	11773	2013	528	11245		1846	0	0	0

Acanthocephala

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Pomphorhynchus laevis (Thorny-headed worm, GPI110) (Pomphorhynchus laevis strain GPI110)	12043	8149	3894	3278	4871		3354	0	0	0

Annelida

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Helobdella robusta (Freshwater leech) (Helobdella robusta)	23432	17018	6414	4446	12572		6343	0	0	0
Dimorphilus gyrociliatus (Segmented worms) (Dimorphilus gyrociliatus)	14030	11719	2311	1194	10525		2144	0	0	0
Owenia fusiformis (Segmented worms) (Owenia fusiformis)	31239	25579	5660	6115	19464		10001	0	0	0

Brachiopoda

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Lingula anatina (Lamp shell, Amm_Jpn) (Lingula anatina strain Amm_Jpn)	26158	24350	1808	2518	21832		9770	0	0	0

Mollusca

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Haliotis rubra (Blacklip abalone, DU_JTF1) (Haliotis rubra strain DU_JTF1)	28504	26931	1573	437	26494		5578	0	0	0
Biomphalaria glabrata (Bloodfluke planorb, BB02) (Biomphalaria glabrata strain BB02)	25550	21156	4394	3575	17581		6174	0	0	0
Octopus bimaculoides (California two-spot octopus, UCB-OBI-ISO-001) (Octopus bimaculoides strain UCB-OBI-ISO-001)	15656	14058	1598	743	13315		2926	0	0	0
Gigantopelta aegis (Deep sea snail, Gae_Host) (Gigantopelta aegis strain Gae_Host)	22179	20827	1352	1528	19299		4978	0	0	0
Lottia gigantea (Owl limpet) (Lottia gigantea)	23340	20495	2845	3418	17077		5220	0	0	0
Crassostrea gigas (Pacific oyster) (Crassostrea gigas)	30418	27653	2765	6192	21461		11081	0	0	0
Haliotis rufescens (Red abalone, VD_foot) (Haliotis rufescens strain VD_foot)	31163	29910	1253	829	29081		6707	0	0	0
Mizuhopecten yessoensis (Yesso scallop, PY_sf001) (Mizuhopecten yessoensis strain PY_sf001)	24474	22469	2005	2009	20460		5657	0	0	0

Platyhelminthes

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Echinococcus granulosus (Dog tapeworm) (Echinococcus granulosus)	11319	6906	4413	703	6203		910	0	0	0
Schistosoma mansoni (Flatworm) (Schistosoma mansoni)	10144	8370	1774	701	7669		1493	0	0	0

Rotifera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Adineta vaga (Rotifer) (Adineta vaga)	49300	41486	7814	13556	27930		27982	0	0	0

Echinodermata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Acanthaster planci (Crown-of-thorns starfish) (Acanthaster planci)	16407	15683	724	395	15288		2347	0	0	0
Asterias rubens (European starfish) (Asterias rubens)	14064	13700	364	122	13578		1747	0	0	0
Lytechinus variegatus (Green sea urchin, NC3) (Lytechinus variegatus strain NC3)	22472	22088	384	238	21850		4507	0	0	0
Lytechinus pictus (Painted urchin, DCL-2020) (Lytechinus pictus strain DCL-2020)	24123	23207	916	221	22986		4783	0	0	0
Strongylocentrotus purpuratus (Purple sea urchin, Spur 01) (Strongylocentrotus purpuratus strain Spur 01)	26947	26323	624	690	25633		9311	0	0	0
Anneissia japonica (Sea lily, Jap-2015-1) (Anneissia japonica strain Jap-2015-1)	20184	18413	1771	1957	16456		5265	0	0	0

Cephalochordata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Branchiostoma lanceolatum (Amphioxus) (Branchiostoma lanceolatum)	35955	29427	6528	5273	24154		13044	0	0	0

Hemichordata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Saccoglossus kowalevskii (Acorn worm) (Saccoglossus kowalevskii)	20561	18771	1790	1064	17707		4729	0	0	0

Acoelomorpha

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Hofstenia miamia (Panther worm, MS-H3) (Hofstenia miamia strain MS-H3)	22454	17555	4899	6379	11176		8017	0	0	0

Cnidaria

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Actinia equina (Beadlet anemone, AE1) (Actinia equina strain AE1)	47671	41444	6227	7043	34401		20500	0	0	0
Dendronephthya gigantea (Carnation coral, DGI-Jeju-01) (Dendronephthya gigantea strain DGI-Jeju-01)	21864	20695	1169	1863	18832		7786	0	0	0
Stylophora pistillata (Hood coral, CSM Monaco) (Stylophora pistillata strain CSM Monaco)	23445	22495	950	477	22018		4465	0	0	0
Clytia hemisphaerica (Jellyfish, Z4C2) (Clytia hemisphaerica strain Z4C2)	19128	16416	2712	3235	13181		5255	0	0	0
Orbicella faveolata (Mountainous star coral, FL) (Orbicella faveolata strain FL)	25858	24503	1355	494	24009		5328	0	0	0
Thelohanellus kitauei (Myxozoan endoparasite) (Thelohanellus kitauei)	15020	9309	5711	5913	3396		5673	0	0	0
Exaiptasia diaphana (Sea anemone, CC7) (Exaiptasia diaphana strain CC7)	9194	8558	636	228	8330		1538	0	0	0
Nematostella vectensis (Starlet sea anemone, CH2 x CH6) (Nematostella vectensis strain CH2 x CH6)	24773	22532	2241	1169	21363		5682	0	0	0
Acropora millepora (Stony coral, JS-1) (Acropora millepora strain JS-1)	29608	28817	791	1386	27431		10982	0	0	0
Hydra vulgaris (Swiftwater hydra, 105) (Hydra vulgaris strain 105)	20964	19885	1079	3423	16462		8974	0	0	0

Ctenophora

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Mnemiopsis leidyi (Warty comb jelly) (Mnemiopsis leidyi)	16058	11257	4801	2998	8259		3705	0	0	0

Placozoa

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Trichoplax adhaerens (Placozoa, Grell-BS-1999) (Trichoplax adhaerens strain Grell-BS-1999)	11520	10131	1389	567	9564		2249	0	0	0

Porifera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Amphimedon queenslandica (Demosponge) (Amphimedon queenslandica)	20111	17965	2146	5170	12795		8730	0	0	0

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