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Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overview
Gene tree coverage and Gene QC for each species
Size of gene trees (split by their root taxon)
Gene tree nodes, and the inference of speciation / duplication events

Gene tree coverage and Gene QC (per species)

Quick links: Nematoda, Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Dictyoptera, Orthoptera, Crustacea, Myriapoda, Chelicerata, Tardigrada, Priapulida, Acanthocephala, Annelida, Brachiopoda, Mollusca, Platyhelminthes, Rotifera, Echinodermata, Cephalochordata, Hemichordata, Acoelomorpha, Cnidaria, Ctenophora, Placozoa, Porifera

Favourite species

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)	19985	14570	5415	5598	8972		5973	0	0	0
Anopheles gambiae (African malaria mosquito, PEST) (Anopheles gambiae strain PEST)	13092	11835	1257	693	11142		2443	0	0	0
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)	13943	11514	2429	788	10726		2256	0	0	0
Apis mellifera (Honey bee, DH4) (Apis mellifera strain DH4)	9824	9511	313	16	9495		178	0	0	0
Octopus bimaculoides (California two-spot octopus) (Octopus bimaculoides)	33609	19420	14189	2661	16759		6248	0	0	0

Nematoda

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Loa loa (Eye worm, Cameroon SouthWest Province isolate) (Loa loa strain Cameroon SouthWest Province isolate)	14908	8668	6240	1141	7527		1370	0	0	0
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)	19985	14570	5415	5598	8972		5973	0	0	0

Coleoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Tribolium castaneum (Red flour beetle, Georgia GA2) (Tribolium castaneum strain Georgia GA2)	16590	12662	3928	1320	11342		2497	0	0	0

Diptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Anopheles gambiae (African malaria mosquito, PEST) (Anopheles gambiae strain PEST)	13092	11835	1257	693	11142		2443	0	0	0
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)	13943	11514	2429	788	10726		2256	0	0	0

Hemiptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Cimex lectularius (Bed bug, Harlan) (Cimex lectularius strain Harlan)	11906	10427	1479	602	9825		1264	0	0	0
Acyrthosiphon pisum (Pea aphid, AL4f) (Acyrthosiphon pisum strain AL4f)	17096	15130	1966	1989	13141		5416	0	0	0

Hymenoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Bombus terrestris (Buff-tailed bumblebee) (Bombus terrestris)	10581	10107	474	61	10046		399	0	0	0
Apis mellifera (Honey bee, DH4) (Apis mellifera strain DH4)	9824	9511	313	16	9495		178	0	0	0

Lepidoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Bombyx mori (Domestic silkworm, p50T) (Bombyx mori strain p50T)	13172	11581	1591	910	10671		2469	0	0	0

Dictyoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Zootermopsis nevadensis (Nevada dampwood termite) (Zootermopsis nevadensis)	14610	11263	3347	738	10525		1475	0	0	0

Orthoptera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Schistocerca americana (American grasshopper, TAMUIC-IGC-003095) (Schistocerca americana strain TAMUIC-IGC-003095)	17610	16135	1475	1524	14611		5123	0	0	0

Crustacea

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Amphibalanus amphitrite (Acorn barnacle, SeventyFive) (Amphibalanus amphitrite strain SeventyFive)	27268	26396	872	2276	24120		13012	0	0	0
Homarus americanus (American lobster, GMGI-L3) (Homarus americanus strain GMGI-L3)	21200	18936	2264	1335	17601		3619	0	0	0
Hyalella azteca (Amphipod, HAZT.00-mixed) (Hyalella azteca strain HAZT.00-mixed)	17829	14938	2891	1706	13232		3425	0	0	0
Penaeus monodon (Black tiger shrimp, SGIC_2016) (Penaeus monodon strain SGIC_2016)	19268	17549	1719	320	17229		2671	0	0	0
Eurytemora affinis (Calanoid copepod, Atlantic clade) (Eurytemora affinis strain Atlantic clade)	19382	14910	4472	1532	13378		3081	0	0	0
Daphnia pulex (Common water flea, KAP4) (Daphnia pulex strain KAP4)	15266	14999	267	81	14918		843	0	0	0
Tigriopus californicus (Copepod, San Diego) (Tigriopus californicus strain San Diego)	15577	12833	2744	1035	11798		1921	0	0	0
Penaeus chinensis (Fleshy prawn) (Penaeus chinensis)	19640	18531	1109	103	18428		1622	0	0	0
Daphnia magna (Fresh water planktonic, NIES) (Daphnia magna strain NIES)	16333	15766	567	959	14807		3617	0	0	0
Pollicipes pollicipes (Goose neck barnacle, AB1234) (Pollicipes pollicipes strain AB1234)	19178	18148	1030	615	17533		6424	0	0	0
Penaeus japonicus (Kuruma shrimp, Ginoza2017) (Penaeus japonicus strain Ginoza2017)	21130	19911	1219	277	19634		2695	0	0	0
Penaeus vannamei (Pacific white shrimp) (Penaeus vannamei)	21151	18520	2631	341	18179		3166	0	0	0
Procambarus clarkii (Red swamp crayfish, Jiangsu) (Procambarus clarkii strain Jiangsu)	25776	24120	1656	2059	22061		6677	0	0	0
Lepeophtheirus salmonis (Salmon louse, Lsal2020) (Lepeophtheirus salmonis strain Lsal2020)	13748	12371	1377	1030	11341		2565	0	0	0
Portunus trituberculatus (Swimming crab, SZX2019) (Portunus trituberculatus strain SZX2019)	16145	14768	1377	803	13965		2326	0	0	0
Daphnia pulicaria (Water flea, SC F1-1A) (Daphnia pulicaria strain SC F1-1A)	16837	16458	379	184	16274		1691	0	0	0

Myriapoda

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Strigamia maritima (Soil centipede) (Strigamia maritima)	14992	12218	2774	1778	10440		3136	0	0	0

Chelicerata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Limulus polyphemus (Atlantic horseshoe crab) (Limulus polyphemus)	22636	20901	1735	951	19950		8665	0	0	0
Ixodes scapularis (Black-legged tick, PalLabHiFi) (Ixodes scapularis strain PalLabHiFi)	26370	24845	1525	6220	18625		14021	0	0	0

Tardigrada

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Hypsibius exemplaris (Water bear tardigrade, Z151) (Hypsibius exemplaris strain Z151)	19912	14475	5437	4838	9637		6293	0	0	0

Priapulida

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Priapulus caudatus (Penis worm) (Priapulus caudatus)	13786	11787	1999	532	11255		1799	0	0	0

Acanthocephala

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Pomphorhynchus laevis (Thorny-headed worm, GPI110) (Pomphorhynchus laevis strain GPI110)	12043	8130	3913	3256	4874		3352	0	0	0

Annelida

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Helobdella robusta (Freshwater leech) (Helobdella robusta)	23432	17029	6403	4412	12617		6381	0	0	0
Dimorphilus gyrociliatus (Segmented worms) (Dimorphilus gyrociliatus)	14030	11721	2309	1189	10532		2129	0	0	0
Owenia fusiformis (Segmented worms) (Owenia fusiformis)	31239	25568	5671	6101	19467		9983	0	0	0

Brachiopoda

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Lingula anatina (Lamp shell, Amm_Jpn) (Lingula anatina strain Amm_Jpn)	26158	24356	1802	2548	21808		9815	0	0	0

Mollusca

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Haliotis rubra (Blacklip abalone, DU_JTF1) (Haliotis rubra strain DU_JTF1)	28504	26943	1561	445	26498		5593	0	0	0
Biomphalaria glabrata (Bloodfluke planorb, BB02) (Biomphalaria glabrata strain BB02)	25550	21186	4364	3557	17629		6126	0	0	0
Octopus bimaculoides (California two-spot octopus) (Octopus bimaculoides)	33609	19420	14189	2661	16759		6248	0	0	0
Gigantopelta aegis (Deep sea snail, Gae_Host) (Gigantopelta aegis strain Gae_Host)	22179	20831	1348	1566	19265		4998	0	0	0
Lottia gigantea (Owl limpet) (Lottia gigantea)	23340	20524	2816	3352	17172		5226	0	0	0
Crassostrea gigas (Pacific oyster) (Crassostrea gigas)	30418	27665	2753	6250	21415		11074	0	0	0
Haliotis rufescens (Red abalone, VD_foot) (Haliotis rufescens strain VD_foot)	31163	29904	1259	831	29073		6759	0	0	0
Mizuhopecten yessoensis (Yesso scallop, PY_sf001) (Mizuhopecten yessoensis strain PY_sf001)	24474	22482	1992	2026	20456		5677	0	0	0

Platyhelminthes

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Echinococcus granulosus (Dog tapeworm) (Echinococcus granulosus)	11319	6906	4413	689	6217		902	0	0	0
Schistosoma mansoni (Flatworm) (Schistosoma mansoni)	10144	8367	1777	693	7674		1498	0	0	0

Rotifera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Adineta vaga (Rotifer) (Adineta vaga)	49300	41457	7843	13545	27912		27967	0	0	0

Echinodermata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Acanthaster planci (Crown-of-thorns starfish) (Acanthaster planci)	16407	15673	734	414	15259		2355	0	0	0
Asterias rubens (European starfish) (Asterias rubens)	14064	13689	375	126	13563		1732	0	0	0
Lytechinus variegatus (Green sea urchin, NC3) (Lytechinus variegatus strain NC3)	22472	21951	521	527	21424		5850	0	0	0
Strongylocentrotus purpuratus (Purple sea urchin, Spur 01) (Strongylocentrotus purpuratus strain Spur 01)	26947	26208	739	809	25399		9405	0	0	0
Anneissia japonica (Sea lily, Jap-2015-1) (Anneissia japonica strain Jap-2015-1)	20184	18420	1764	1971	16449		5276	0	0	0

Cephalochordata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Branchiostoma lanceolatum (Amphioxus) (Branchiostoma lanceolatum)	35955	29417	6538	5215	24202		13059	0	0	0

Hemichordata

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Saccoglossus kowalevskii (Acorn worm) (Saccoglossus kowalevskii)	20561	18774	1787	1090	17684		4770	0	0	0

Acoelomorpha

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Hofstenia miamia (Panther worm, MS-H3) (Hofstenia miamia strain MS-H3)	22454	17568	4886	6429	11139		7976	0	0	0

Cnidaria

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Actinia equina (Beadlet anemone, AE1) (Actinia equina strain AE1)	47671	41447	6224	7121	34326		20494	0	0	0
Dendronephthya gigantea (Carnation coral, DGI-Jeju-01) (Dendronephthya gigantea strain DGI-Jeju-01)	21864	20690	1174	1806	18884		7845	0	0	0
Stylophora pistillata (Hood coral, CSM Monaco) (Stylophora pistillata strain CSM Monaco)	23445	22489	956	508	21981		4454	0	0	0
Clytia hemisphaerica (Jellyfish, Z4C2) (Clytia hemisphaerica strain Z4C2)	19128	16403	2725	3285	13118		5272	0	0	0
Orbicella faveolata (Mountainous star coral, FL) (Orbicella faveolata strain FL)	25858	24504	1354	491	24013		5304	0	0	0
Thelohanellus kitauei (Myxozoan endoparasite) (Thelohanellus kitauei)	15020	9319	5701	5933	3386		5661	0	0	0
Exaiptasia diaphana (Sea anemone, CC7) (Exaiptasia diaphana strain CC7)	9194	8561	633	233	8328		1561	0	0	0
Nematostella vectensis (Starlet sea anemone, CH2 x CH6) (Nematostella vectensis strain CH2 x CH6)	24773	22535	2238	1166	21369		5681	0	0	0
Acropora millepora (Stony coral, JS-1) (Acropora millepora strain JS-1)	29608	28818	790	1368	27450		11049	0	0	0
Hydra vulgaris (Swiftwater hydra, 105) (Hydra vulgaris strain 105)	20964	19876	1088	3340	16536		9020	0	0	0

Ctenophora

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Mnemiopsis leidyi (Warty comb jelly) (Mnemiopsis leidyi)	16058	11267	4791	3014	8253		3727	0	0	0

Placozoa

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Trichoplax adhaerens (Placozoa, Grell-BS-1999) (Trichoplax adhaerens strain Grell-BS-1999)	11520	10136	1384	570	9566		2233	0	0	0

Porifera

Species	# Genes	# Genes in a tree	# Orphaned genes	# Genes in a single-species tree	# Genes in a multi-species tree	Coverage	# species-specific duplications	# Split genes	# short genes	# Long genes	Gene QC
Amphimedon queenslandica (Demosponge) (Amphimedon queenslandica)	20111	17954	2157	5182	12772		8712	0	0	0

Personal Data