Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Size of the trees (per root node)
| Species | # Trees | % Trees | # Genes | % Genes | Min # genes | Max # genes | Average # genes | Min # species | Max # species | Average # species | Average # genes per species |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Animals (Metazoa) | 7587 | 1053529 | 2 | 6879 | 138.9 | 2 | 74 | 48.5 | 1.8 | ||
| Eumetazoa | 10183 | 401193 | 2 | 4898 | 39.4 | 2 | 72 | 16.1 | 1.9 | ||
| Mnemiopsis leidyi (Warty comb jelly) (Mnemiopsis leidyi) | 668 | 2998 | 2 | 42 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Cnidarians (Cnidaria) | 509 | 4856 | 2 | 53 | 9.5 | 2 | 10 | 4.9 | 2.0 | ||
| Anthozoans (Anthozoa) | 582 | 6252 | 2 | 54 | 10.7 | 2 | 7 | 4.4 | 2.4 | ||
| Hexacorallia | 1380 | 9869 | 2 | 51 | 7.2 | 2 | 6 | 3.5 | 2.0 | ||
| Stony corals (Scleractinia) | 907 | 4832 | 2 | 44 | 5.3 | 2 | 3 | 2.5 | 2.1 | ||
| Astrocoeniina | 130 | 582 | 2 | 33 | 4.5 | 2 | 2 | 2.0 | 2.2 | ||
| Acropora millepora (Stony coral, JS-1) (Acropora millepora strain JS-1) | 261 | 1386 | 2 | 48 | 5.3 | 1 | 1 | 1.0 | 5.3 | ||
| Stylophora pistillata (Hood coral, CSM Monaco) (Stylophora pistillata strain CSM Monaco) | 156 | 477 | 2 | 19 | 3.1 | 1 | 1 | 1.0 | 3.1 | ||
| Orbicella faveolata (Mountainous star coral, FL) (Orbicella faveolata strain FL) | 204 | 494 | 2 | 9 | 2.4 | 1 | 1 | 1.0 | 2.4 | ||
| Sea anemones (Actiniaria) | 521 | 2595 | 2 | 44 | 5.0 | 2 | 3 | 2.1 | 2.3 | ||
| Exaiptasia diaphana (Sea anemone, CC7) (Exaiptasia diaphana strain CC7) | 87 | 228 | 2 | 10 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Nematostella vectensis (Starlet sea anemone, CH2 x CH6) (Nematostella vectensis strain CH2 x CH6) | 378 | 1169 | 2 | 25 | 3.1 | 1 | 1 | 1.0 | 3.1 | ||
| Actinia equina (Beadlet anemone, AE1) (Actinia equina strain AE1) | 1763 | 7043 | 2 | 41 | 4.0 | 1 | 1 | 1.0 | 4.0 | ||
| Dendronephthya gigantea (Carnation coral, DGI-Jeju-01) (Dendronephthya gigantea strain DGI-Jeju-01) | 402 | 1863 | 2 | 47 | 4.6 | 1 | 1 | 1.0 | 4.6 | ||
| Hydroidolina | 595 | 2249 | 2 | 45 | 3.8 | 2 | 2 | 2.0 | 1.9 | ||
| Clytia hemisphaerica (Jellyfish, Z4C2) (Clytia hemisphaerica strain Z4C2) | 831 | 3235 | 2 | 47 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Hydra vulgaris (Swiftwater hydra, 105) (Hydra vulgaris strain 105) | 508 | 3423 | 2 | 49 | 6.7 | 1 | 1 | 1.0 | 6.7 | ||
| Thelohanellus kitauei (Myxozoan endoparasite) (Thelohanellus kitauei) | 1231 | 5913 | 2 | 53 | 4.8 | 1 | 1 | 1.0 | 4.8 | ||
| Bilateral animals (Bilateria) | 3940 | 63761 | 2 | 1115 | 16.2 | 2 | 61 | 9.1 | 1.6 | ||
| Deuterostomes (Deuterostomia) | 470 | 3189 | 2 | 373 | 6.8 | 2 | 8 | 3.9 | 1.6 | ||
| Branchiostoma lanceolatum (Amphioxus) (Branchiostoma lanceolatum) | 1399 | 5273 | 2 | 49 | 3.8 | 1 | 1 | 1.0 | 3.8 | ||
| Echinoderms (Echinodermata) | 272 | 1755 | 2 | 53 | 6.5 | 2 | 6 | 3.9 | 1.6 | ||
| Eleutherozoa | 203 | 1192 | 2 | 40 | 5.9 | 2 | 5 | 3.8 | 1.5 | ||
| Starfish (Asteroidea) | 290 | 836 | 2 | 20 | 2.9 | 2 | 2 | 2.0 | 1.4 | ||
| Asterias rubens (European starfish) (Asterias rubens) | 38 | 122 | 2 | 15 | 3.2 | 1 | 1 | 1.0 | 3.2 | ||
| Acanthaster planci (Crown-of-thorns starfish) (Acanthaster planci) | 118 | 395 | 2 | 28 | 3.3 | 1 | 1 | 1.0 | 3.3 | ||
| Echinacea | 1158 | 6947 | 2 | 229 | 6.0 | 2 | 3 | 2.7 | 2.1 | ||
| Strongylocentrotus purpuratus (Purple sea urchin, Spur 01) (Strongylocentrotus purpuratus strain Spur 01) | 178 | 690 | 2 | 36 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Lytechinus | 256 | 998 | 2 | 41 | 3.9 | 2 | 2 | 2.0 | 1.9 | ||
| Lytechinus variegatus (Green sea urchin, NC3) (Lytechinus variegatus strain NC3) | 61 | 238 | 2 | 28 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Lytechinus pictus (Painted urchin, DCL-2020) (Lytechinus pictus strain DCL-2020) | 91 | 221 | 2 | 12 | 2.4 | 1 | 1 | 1.0 | 2.4 | ||
| Anneissia japonica (Sea lily, Jap-2015-1) (Anneissia japonica strain Jap-2015-1) | 432 | 1957 | 2 | 43 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Saccoglossus kowalevskii (Acorn worm) (Saccoglossus kowalevskii) | 257 | 1064 | 2 | 51 | 4.1 | 1 | 1 | 1.0 | 4.1 | ||
| Protostomia | 3902 | 34631 | 2 | 1383 | 8.9 | 2 | 52 | 5.1 | 1.5 | ||
| Spiralia | 247 | 1434 | 2 | 48 | 5.8 | 2 | 15 | 2.8 | 2.1 | ||
| Adineta vaga (Rotifer) (Adineta vaga) | 3965 | 13556 | 2 | 54 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Lophotrochozoa | 1035 | 7358 | 2 | 55 | 7.1 | 2 | 14 | 4.4 | 1.7 | ||
| Segmented worms (Annelida) | 87 | 310 | 2 | 22 | 3.6 | 2 | 3 | 2.1 | 1.7 | ||
| Helobdella robusta (Freshwater leech) (Helobdella robusta) | 767 | 4446 | 2 | 54 | 5.8 | 1 | 1 | 1.0 | 5.8 | ||
| Polychaetes (Polychaeta) | 32 | 105 | 2 | 10 | 3.3 | 2 | 2 | 2.0 | 1.6 | ||
| Dimorphilus gyrociliatus (Segmented worms) (Dimorphilus gyrociliatus) | 286 | 1194 | 2 | 37 | 4.2 | 1 | 1 | 1.0 | 4.2 | ||
| Owenia fusiformis (Segmented worms) (Owenia fusiformis) | 1379 | 6115 | 2 | 44 | 4.4 | 1 | 1 | 1.0 | 4.4 | ||
| Lingula anatina (Lamp shell, Amm_Jpn) (Lingula anatina strain Amm_Jpn) | 683 | 2518 | 2 | 45 | 3.7 | 1 | 1 | 1.0 | 3.7 | ||
| Flatworms (Platyhelminthes) | 409 | 996 | 2 | 18 | 2.4 | 2 | 2 | 2.0 | 1.2 | ||
| Echinococcus granulosus (Dog tapeworm) (Echinococcus granulosus) | 254 | 703 | 2 | 16 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Schistosoma mansoni (Flatworm) (Schistosoma mansoni) | 217 | 701 | 2 | 22 | 3.2 | 1 | 1 | 1.0 | 3.2 | ||
| Molluscs (Mollusca) | 1019 | 7104 | 2 | 46 | 7.0 | 2 | 8 | 4.2 | 1.7 | ||
| Gastropods (Gastropoda) | 958 | 5569 | 2 | 47 | 5.8 | 2 | 5 | 2.9 | 1.9 | ||
| Gigantopelta aegis (Deep sea snail, Gae_Host) (Gigantopelta aegis strain Gae_Host) | 336 | 1528 | 2 | 32 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Biomphalaria glabrata (Bloodfluke planorb, BB02) (Biomphalaria glabrata strain BB02) | 839 | 3575 | 2 | 51 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Lottia gigantea (Owl limpet) (Lottia gigantea) | 628 | 3418 | 2 | 48 | 5.4 | 1 | 1 | 1.0 | 5.4 | ||
| Haliotis | 1358 | 7255 | 2 | 42 | 5.3 | 2 | 2 | 2.0 | 2.7 | ||
| Haliotis rufescens (Red abalone, VD_foot) (Haliotis rufescens strain VD_foot) | 215 | 829 | 2 | 29 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Haliotis rubra (Blacklip abalone, DU_JTF1) (Haliotis rubra strain DU_JTF1) | 166 | 437 | 2 | 10 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Octopus bimaculoides (California two-spot octopus, UCB-OBI-ISO-001) (Octopus bimaculoides strain UCB-OBI-ISO-001) | 194 | 743 | 2 | 27 | 3.8 | 1 | 1 | 1.0 | 3.8 | ||
| Pteriomorphia | 427 | 2110 | 2 | 50 | 4.9 | 2 | 2 | 2.0 | 2.5 | ||
| Crassostrea gigas (Pacific oyster) (Crassostrea gigas) | 1196 | 6192 | 2 | 48 | 5.2 | 1 | 1 | 1.0 | 5.2 | ||
| Mizuhopecten yessoensis (Yesso scallop, PY_sf001) (Mizuhopecten yessoensis strain PY_sf001) | 471 | 2009 | 2 | 47 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Pomphorhynchus laevis (Thorny-headed worm, GPI110) (Pomphorhynchus laevis strain GPI110) | 827 | 3278 | 2 | 45 | 4.0 | 1 | 1 | 1.0 | 4.0 | ||
| Arthropods and nematodes (Ecdysozoa) | 348 | 6442 | 2 | 1101 | 18.5 | 2 | 36 | 6.0 | 1.5 | ||
| Panarthropoda | 155 | 3442 | 2 | 600 | 22.2 | 2 | 33 | 8.8 | 1.6 | ||
| Arthropods (Arthropoda) | 689 | 23132 | 2 | 3182 | 33.6 | 2 | 31 | 9.4 | 1.8 | ||
| Chelicerates (Chelicerata) | 137 | 650 | 2 | 43 | 4.7 | 2 | 2 | 2.0 | 2.4 | ||
| Limulus polyphemus (Atlantic horseshoe crab) (Limulus polyphemus) | 341 | 946 | 2 | 13 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Ixodes scapularis (Black-legged tick, PalLabHiFi) (Ixodes scapularis strain PalLabHiFi) | 687 | 6280 | 2 | 54 | 9.1 | 1 | 1 | 1.0 | 9.1 | ||
| Mandibulates (Mandibulata) | 189 | 1892 | 2 | 129 | 10.0 | 2 | 28 | 6.6 | 1.4 | ||
| Pancrustacea | 888 | 12795 | 2 | 1043 | 14.4 | 2 | 28 | 8.2 | 1.6 | ||
| Neoptera | 1220 | 10291 | 2 | 605 | 8.4 | 2 | 11 | 5.4 | 1.5 | ||
| Polyneoptera | 88 | 220 | 2 | 23 | 2.5 | 2 | 2 | 2.0 | 1.2 | ||
| Schistocerca americana (American grasshopper, TAMUIC-IGC-003095) (Schistocerca americana strain TAMUIC-IGC-003095) | 308 | 1548 | 2 | 49 | 5.0 | 1 | 1 | 1.0 | 5.0 | ||
| Zootermopsis nevadensis (Nevada dampwood termite) (Zootermopsis nevadensis) | 216 | 780 | 2 | 25 | 3.6 | 1 | 1 | 1.0 | 3.6 | ||
| Bugs (Hemiptera) | 49 | 183 | 2 | 44 | 3.7 | 2 | 2 | 2.0 | 1.9 | ||
| Cimex lectularius (Bed bug, Harlan) (Cimex lectularius strain Harlan) | 189 | 604 | 2 | 21 | 3.2 | 1 | 1 | 1.0 | 3.2 | ||
| Acyrthosiphon pisum (Pea aphid, AL4f) (Acyrthosiphon pisum strain AL4f) | 515 | 1942 | 2 | 53 | 3.8 | 1 | 1 | 1.0 | 3.8 | ||
| Endopterygota | 342 | 1463 | 2 | 34 | 4.3 | 2 | 7 | 3.3 | 1.3 | ||
| Honey bees (Apinae) | 775 | 2442 | 2 | 41 | 3.2 | 2 | 3 | 2.8 | 1.1 | ||
| Buff-tailed bumblebee (Bombus terrestris) | 248 | 700 | 2 | 20 | 2.8 | 2 | 2 | 2.0 | 1.4 | ||
| Bombus terrestris (buff-tailed bumblebee, reference) (Bombus terrestris reference strain) | 102 | 458 | 2 | 32 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Bombus terrestris (Buff-tailed bumblebee) (Bombus terrestris Bter_1.0) | 10 | 22 | 2 | 3 | 2.2 | 1 | 1 | 1.0 | 2.2 | ||
| Apis mellifera (Honey bee, DH4) (Apis mellifera strain DH4) | 5 | 17 | 2 | 6 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Flies (Diptera) | 350 | 1271 | 2 | 103 | 3.6 | 2 | 2 | 2.0 | 1.6 | ||
| Anopheles gambiae (African malaria mosquito, PEST) (Anopheles gambiae strain PEST) | 186 | 688 | 2 | 21 | 3.7 | 1 | 1 | 1.0 | 3.7 | ||
| Drosophila melanogaster (Fruit fly) (Drosophila melanogaster) | 284 | 789 | 2 | 23 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Tribolium castaneum (Red flour beetle, Georgia GA2) (Tribolium castaneum strain Georgia GA2) | 335 | 1311 | 2 | 33 | 3.9 | 1 | 1 | 1.0 | 3.9 | ||
| Bombyx mori (Domestic silkworm, p50T) (Bombyx mori strain p50T) | 203 | 916 | 2 | 31 | 4.5 | 1 | 1 | 1.0 | 4.5 | ||
| Crustaceans (Crustacea) | 133 | 2870 | 2 | 1497 | 21.6 | 2 | 16 | 6.8 | 2.3 | ||
| Multicrustacea | 583 | 3735 | 2 | 41 | 6.4 | 2 | 13 | 4.3 | 1.5 | ||
| Thoracicalcarea | 941 | 4480 | 2 | 42 | 4.8 | 2 | 2 | 2.0 | 2.4 | ||
| Amphibalanus amphitrite (Acorn barnacle, SeventyFive) (Amphibalanus amphitrite strain SeventyFive) | 640 | 2292 | 2 | 47 | 3.6 | 1 | 1 | 1.0 | 3.6 | ||
| Pollicipes pollicipes (Goose neck barnacle, AB1234) (Pollicipes pollicipes strain AB1234) | 214 | 585 | 2 | 17 | 2.7 | 1 | 1 | 1.0 | 2.7 | ||
| Neocopepoda | 833 | 3493 | 2 | 46 | 4.2 | 2 | 3 | 2.5 | 1.6 | ||
| Eurytemora affinis (Calanoid copepod, Atlantic clade) (Eurytemora affinis strain Atlantic clade) | 431 | 1533 | 2 | 31 | 3.6 | 1 | 1 | 1.0 | 3.6 | ||
| Podoplea | 294 | 769 | 2 | 19 | 2.6 | 2 | 2 | 2.0 | 1.3 | ||
| Lepeophtheirus salmonis (Salmon louse, Lsal2020) (Lepeophtheirus salmonis strain Lsal2020) | 194 | 1044 | 2 | 42 | 5.4 | 1 | 1 | 1.0 | 5.4 | ||
| Tigriopus californicus (Copepod, San Diego) (Tigriopus californicus strain San Diego) | 297 | 1066 | 2 | 23 | 3.6 | 1 | 1 | 1.0 | 3.6 | ||
| Eumalacostraca | 908 | 8289 | 2 | 52 | 9.1 | 2 | 9 | 5.8 | 1.5 | ||
| Hyalella azteca (Amphipod, HAZT.00-mixed) (Hyalella azteca strain HAZT.00-mixed) | 393 | 1714 | 2 | 48 | 4.4 | 1 | 1 | 1.0 | 4.4 | ||
| Decapoda | 2057 | 15904 | 2 | 51 | 7.7 | 2 | 8 | 4.9 | 1.5 | ||
| Penaeus | 1679 | 9277 | 2 | 48 | 5.5 | 2 | 4 | 2.8 | 1.8 | ||
| Penaeus monodon (Black tiger shrimp, SGIC_2016) (Penaeus monodon strain SGIC_2016) | 116 | 303 | 2 | 9 | 2.6 | 1 | 1 | 1.0 | 2.6 | ||
| Penaeus chinensis (Fleshy prawn) (Penaeus chinensis) | 39 | 111 | 2 | 11 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Penaeus japonicus (Kuruma shrimp, Ginoza2017) (Penaeus japonicus strain Ginoza2017) | 92 | 280 | 2 | 17 | 3.0 | 1 | 1 | 1.0 | 3.0 | ||
| Penaeus vannamei (Pacific white shrimp) (Penaeus vannamei) | 139 | 340 | 2 | 9 | 2.4 | 1 | 1 | 1.0 | 2.4 | ||
| Pleocyemata | 192 | 1254 | 2 | 50 | 6.5 | 2 | 4 | 2.9 | 2.1 | ||
| Portunus trituberculatus (Swimming crab, SZX2019) (Portunus trituberculatus strain SZX2019) | 186 | 777 | 2 | 23 | 4.2 | 1 | 1 | 1.0 | 4.2 | ||
| True lobsters and crayfishes (Astacidea) | 436 | 1688 | 2 | 51 | 3.9 | 2 | 3 | 2.4 | 1.6 | ||
| Homarus | 492 | 1655 | 2 | 40 | 3.4 | 2 | 2 | 2.0 | 1.7 | ||
| Homarus gammarus (European lobster, reference) (Homarus gammarus reference strain) | 334 | 1697 | 2 | 32 | 5.1 | 1 | 1 | 1.0 | 5.1 | ||
| Homarus americanus (American lobster, GMGI-L3) (Homarus americanus strain GMGI-L3) | 263 | 889 | 2 | 20 | 3.4 | 1 | 1 | 1.0 | 3.4 | ||
| Procambarus clarkii (Red swamp crayfish, Jiangsu) (Procambarus clarkii strain Jiangsu) | 493 | 1988 | 2 | 35 | 4.0 | 1 | 1 | 1.0 | 4.0 | ||
| Common water fleas (Daphnia) | 1593 | 7725 | 2 | 46 | 4.8 | 2 | 3 | 2.6 | 1.9 | ||
| Daphnia pulex (Common water flea, KAP4) (Daphnia pulex strain KAP4) | 28 | 77 | 2 | 12 | 2.8 | 1 | 1 | 1.0 | 2.8 | ||
| Daphnia magna (Fresh water planktonic, NIES) (Daphnia magna strain NIES) | 225 | 973 | 2 | 32 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Daphnia pulicaria (Water flea, SC F1-1A) (Daphnia pulicaria strain SC F1-1A) | 61 | 183 | 2 | 13 | 3.0 | 1 | 1 | 1.0 | 3.0 | ||
| Strigamia maritima (Soil centipede) (Strigamia maritima) | 408 | 1757 | 2 | 36 | 4.3 | 1 | 1 | 1.0 | 4.3 | ||
| Parachela | 1499 | 5413 | 2 | 51 | 3.6 | 2 | 2 | 2.0 | 1.8 | ||
| Paramacrobiotus metropolitanus (Water bear tardigrade, TYO) (Paramacrobiotus metropolitanus strain TYO) | 772 | 4952 | 2 | 57 | 6.4 | 1 | 1 | 1.0 | 6.4 | ||
| Hypsibius exemplaris (Water bear tardigrade, Z151) (Hypsibius exemplaris strain Z151) | 745 | 3279 | 2 | 39 | 4.4 | 1 | 1 | 1.0 | 4.4 | ||
| Priapulus caudatus (Penis worm) (Priapulus caudatus) | 180 | 528 | 2 | 26 | 2.9 | 1 | 1 | 1.0 | 2.9 | ||
| Rhabditida | 1204 | 3426 | 2 | 61 | 2.8 | 2 | 2 | 2.0 | 1.4 | ||
| Loa loa (Eye worm, Cameroon SouthWest Province isolate) (Loa loa strain Cameroon SouthWest Province isolate) | 350 | 1140 | 2 | 33 | 3.3 | 1 | 1 | 1.0 | 3.3 | ||
| Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2) | 1197 | 6401 | 2 | 283 | 5.3 | 1 | 1 | 1.0 | 4.7 | ||
| Hofstenia miamia (Panther worm, MS-H3) (Hofstenia miamia strain MS-H3) | 1531 | 6379 | 2 | 49 | 4.2 | 1 | 1 | 1.0 | 4.2 | ||
| Trichoplax adhaerens (Placozoa, Grell-BS-1999) (Trichoplax adhaerens strain Grell-BS-1999) | 159 | 567 | 2 | 28 | 3.6 | 1 | 1 | 1.0 | 3.6 | ||
| Amphimedon queenslandica (Demosponge) (Amphimedon queenslandica) | 892 | 5170 | 2 | 49 | 5.8 | 1 | 1 | 1.0 | 5.8 |
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