Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Statistics about the gene tree nodes
| Species | # Nodes | # speciation nodes | # duplication nodes | # dubious nodes | Node types | Average duplication confidence score | Average duplication confidence score (non-dubious nodes) |
|---|---|---|---|---|---|---|---|
| Animals (Metazoa) | 12232 | 8073 | 3103 | 1056 | 19.7 % | 26.4 % | |
| Eumetazoa | 70327 | 40055 | 16551 | 13721 | 10.5 % | 19.1 % | |
| Cnidarians (Cnidaria) | 9449 | 8285 | 990 | 174 | 39.6 % | 46.6 % | |
| Hydroidolina | 7429 | 6836 | 593 | 0 | 70.3 % | 70.3 % | |
| Anthozoans (Anthozoa) | 11554 | 10010 | 1406 | 138 | 43.1 % | 47.3 % | |
| Hexacorallia | 19203 | 15814 | 3158 | 231 | 47.4 % | 50.9 % | |
| Sea anemones (Actiniaria) | 17259 | 16045 | 1214 | 0 | 63.3 % | 63.3 % | |
| Stony corals (Scleractinia) | 22292 | 15629 | 3091 | 3572 | 28.4 % | 61.3 % | |
| Astrocoeniina | 8257 | 7833 | 424 | 0 | 60.7 % | 60.7 % | |
| Bilateral animals (Bilateria) | 48640 | 30284 | 7238 | 11118 | 7.7 % | 19.6 % | |
| Deuterostomes (Deuterostomia) | 18529 | 17112 | 1144 | 273 | 35.5 % | 44.0 % | |
| Echinoderms (Echinodermata) | 9902 | 9163 | 616 | 123 | 42.6 % | 51.1 % | |
| Eleutherozoa | 10222 | 9738 | 461 | 23 | 49.4 % | 51.9 % | |
| Echinacea | 17572 | 14473 | 3067 | 32 | 75.0 % | 75.8 % | |
| Lytechinus | 16652 | 14881 | 1771 | 0 | 77.2 % | 77.2 % | |
| Starfish (Asteroidea) | 10856 | 10063 | 793 | 0 | 75.0 % | 75.0 % | |
| Protostomia | 32356 | 25018 | 2534 | 4804 | 7.4 % | 21.4 % | |
| Spiralia | 6440 | 5571 | 339 | 530 | 15.4 % | 39.5 % | |
| Lophotrochozoa | 36236 | 31380 | 2262 | 2594 | 16.0 % | 34.3 % | |
| Flatworms (Platyhelminthes) | 4735 | 4357 | 378 | 0 | 75.9 % | 75.9 % | |
| Molluscs (Mollusca) | 25555 | 22998 | 1799 | 758 | 29.9 % | 42.5 % | |
| Pteriomorphia | 11498 | 10641 | 857 | 0 | 72.8 % | 72.8 % | |
| Gastropods (Gastropoda) | 33676 | 32028 | 1626 | 22 | 58.0 % | 58.8 % | |
| Haliotis | 22371 | 17683 | 4688 | 0 | 82.3 % | 82.3 % | |
| Segmented worms (Annelida) | 4263 | 3891 | 193 | 179 | 27.1 % | 52.2 % | |
| Polychaetes (Polychaeta) | 2466 | 2380 | 86 | 0 | 61.0 % | 61.0 % | |
| Arthropods and nematodes (Ecdysozoa) | 11603 | 9868 | 506 | 1229 | 6.6 % | 22.5 % | |
| Panarthropoda | 5925 | 4739 | 391 | 795 | 9.3 % | 28.4 % | |
| Arthropods (Arthropoda) | 15480 | 11807 | 1259 | 2414 | 8.2 % | 23.9 % | |
| Chelicerates (Chelicerata) | 5813 | 5472 | 341 | 0 | 63.6 % | 63.6 % | |
| Mandibulates (Mandibulata) | 6045 | 5333 | 264 | 448 | 9.5 % | 25.6 % | |
| Pancrustacea | 18575 | 13819 | 1353 | 3403 | 7.0 % | 24.7 % | |
| Neoptera | 24523 | 20232 | 1314 | 2977 | 10.7 % | 35.1 % | |
| Endopterygota | 18993 | 18620 | 314 | 59 | 36.6 % | 43.5 % | |
| Honey bees (Apinae) | 9255 | 9003 | 249 | 3 | 74.3 % | 75.2 % | |
| Buff-tailed bumblebee (Bombus terrestris) | 9620 | 9268 | 352 | 0 | 78.0 % | 78.0 % | |
| Flies (Diptera) | 7316 | 7050 | 266 | 0 | 67.7 % | 67.7 % | |
| Bugs (Hemiptera) | 4136 | 4080 | 56 | 0 | 66.1 % | 66.1 % | |
| Polyneoptera | 7032 | 6918 | 114 | 0 | 63.2 % | 63.2 % | |
| Crustaceans (Crustacea) | 6918 | 6353 | 232 | 333 | 14.4 % | 35.0 % | |
| Common water fleas (Daphnia) | 29045 | 23911 | 5134 | 0 | 81.9 % | 81.9 % | |
| Multicrustacea | 14781 | 13951 | 643 | 187 | 31.7 % | 41.0 % | |
| Thoracicalcarea | 11594 | 9575 | 2019 | 0 | 80.2 % | 80.2 % | |
| Eumalacostraca | 9465 | 8468 | 912 | 85 | 48.5 % | 53.0 % | |
| Decapoda | 18920 | 15437 | 2491 | 992 | 34.3 % | 47.9 % | |
| Penaeus | 42714 | 38821 | 3893 | 0 | 66.8 % | 66.8 % | |
| Pleocyemata | 10311 | 9850 | 428 | 33 | 53.8 % | 57.9 % | |
| True lobsters and crayfishes (Astacidea) | 12974 | 12302 | 664 | 8 | 62.5 % | 63.2 % | |
| Homarus | 15212 | 13603 | 1609 | 0 | 78.7 % | 78.7 % | |
| Neocopepoda | 9042 | 7796 | 1162 | 84 | 59.9 % | 64.2 % | |
| Podoplea | 7007 | 6692 | 315 | 0 | 69.7 % | 69.7 % | |
| Parachela | 9985 | 8107 | 1878 | 0 | 80.0 % | 80.0 % | |
| Rhabditida | 5799 | 5386 | 413 | 0 | 71.9 % | 71.9 % |
![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
![[twitter logo]](/i/twitter.png "Follow us on Twitter!")
