46 pangenome_drosophila Cactus
This alignment has been generated in Ensembl Metazoa release 62 and is composed of 90,968 blocks (up to 17,616 bp long).
API access
| Species | Assembly | Genome length (bp) | Genome coverage (bp) | Genome coverage (%) | Coding exon length (bp) | Coding exon coverage (bp) | Coding exon coverage (%) |
|---|---|---|---|---|---|---|---|
| Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster) | BDGP6.54 | 143,726,002 | 94,595,355 | 65.82 | 22,955,928 | 20,898,895 | 91.04 |
| Drosophila mauritiana (Fruit fly, mau12) (Drosophila mauritiana) | ASM438214v1 | 152,313,266 | 93,180,103 | 61.18 | 22,941,187 | 20,536,962 | 89.52 |
| Drosophila simulans (Fruit fly, w501) (Drosophila simulans) | Prin_Dsim_3.1 | 131,663,590 | 93,075,606 | 70.69 | 23,238,243 | 20,681,449 | 89.00 |
| Drosophila sechellia (Fruit fly, sech25) (Drosophila sechellia) | ASM438219v2 | 153,084,571 | 92,714,989 | 60.56 | 23,087,942 | 20,557,368 | 89.04 |
| Drosophila erecta (Fruit fly, 14021-0224.00,06,07) (Drosophila erecta) | DereRS2 | 146,538,397 | 91,175,023 | 62.22 | 22,591,372 | 20,259,465 | 89.68 |
| Drosophila teissieri (Fruit fly, GT53w) (Drosophila teissieri) | Prin_Dtei_1.1 | 149,494,471 | 92,764,082 | 62.05 | 23,459,557 | 20,331,001 | 86.66 |
| Drosophila santomea (Fruit fly, STO CAGO 1482) (Drosophila santomea) | Prin_Dsan_1.1 | 146,800,522 | 92,433,889 | 62.97 | 23,158,089 | 20,407,567 | 88.12 |
| Drosophila yakuba (Fruit fly, Tai18E2) (Drosophila yakuba) | Prin_Dyak_Tai18E2_2.1 | 147,899,117 | 92,328,674 | 62.43 | 23,334,524 | 20,471,309 | 87.73 |
| Drosophila eugracilis (Fruit fly, 14026-0451.02) (Drosophila eugracilis) | ASM1815383v1 | 164,811,307 | 90,718,610 | 55.04 | 23,108,528 | 20,047,899 | 86.76 |
| Drosophila biarmipes (Fruit fly, raj3) (Drosophila biarmipes) | RU_DBia_V1.1 | 193,597,863 | 92,061,077 | 47.55 | 23,514,107 | 20,043,883 | 85.24 |
| Drosophila subpulchrella (Fruit fly, 33 F10 #4) (Drosophila subpulchrella) | RU_Dsub_v1.1 | 265,153,789 | 95,420,478 | 35.99 | 23,997,913 | 19,974,281 | 83.23 |
| Drosophila suzukii (Pomace flies, WT10) (Drosophila suzukii) | Dsuz_RU_1.0 | 178,737,268 | 94,736,945 | 53.00 | 23,631,164 | 19,967,304 | 84.50 |
| Drosophila takahashii (Pomace flies, IR98-3 E-12201) (Drosophila takahashii) | DtakHiC1v2 | 195,929,306 | 94,544,713 | 48.25 | 24,844,464 | 20,013,051 | 80.55 |
| Drosophila rhopaloa (Fruit fly, 14029-0021.01) (Drosophila rhopaloa) | ASM1815211v1 | 193,508,231 | 93,976,481 | 48.56 | 23,825,932 | 19,904,453 | 83.54 |
| Drosophila gunungcola (Fruit fly, Sukarami) (Drosophila gunungcola) | Dgunungcola_SK_2 | 189,841,955 | 94,702,775 | 49.89 | 23,000,696 | 19,826,349 | 86.20 |
| Drosophila elegans (Pomace flies, 14027-0461.03) (Drosophila elegans) | ASM1815250v1 | 178,445,117 | 94,631,710 | 53.03 | 23,088,748 | 19,992,704 | 86.59 |
| Drosophila ficusphila (Fruit fly, 14025-0441.05) (Drosophila ficusphila) | ASM1815226v1 | 167,832,931 | 88,919,968 | 52.98 | 23,377,938 | 19,822,757 | 84.79 |
| Drosophila kikkawai (Pomace flies, 14028-0561.14) (Drosophila kikkawai) | DkikHiC1v2 | 188,497,101 | 86,966,652 | 46.14 | 24,713,900 | 19,478,338 | 78.82 |
| Drosophila serrata (Pomace flies, Fors4) (Drosophila serrata) | Dser1.1 | 196,034,539 | 89,898,725 | 45.86 | 23,121,744 | 19,202,573 | 83.05 |
| Drosophila bipectinata (Pomace flies, 14024-0381.07) (Drosophila bipectinata) | DbipHiC1v2 | 191,877,550 | 76,447,154 | 39.84 | 24,129,746 | 19,284,282 | 79.92 |
| Drosophila ananassae (Fruit fly, 14024-0371.13) (Drosophila ananassae) | ASM1763931v2 | 213,817,545 | 76,918,133 | 35.97 | 24,452,740 | 19,447,401 | 79.53 |
| Drosophila persimilis (Fruit fly, 14011-0111.01,24,50) (Drosophila persimilis) | DperRS2 | 195,512,972 | 74,361,976 | 38.03 | 23,610,349 | 18,703,415 | 79.22 |
| Drosophila pseudoobscura (Fruit fly, MV2-25) (Drosophila pseudoobscura) | UCI_Dpse_MV25 | 163,282,969 | 74,712,930 | 45.76 | 23,940,106 | 19,068,884 | 79.65 |
| Drosophila miranda (Fruit fly, MSH22) (Drosophila miranda) | D.miranda_PacBio2.1 | 287,096,000 | 74,877,640 | 26.08 | 29,313,613 | 18,889,171 | 64.44 |
| Drosophila guanche (Fruit fly) (Drosophila guanche) | DGUA_6 | 140,632,981 | 71,614,684 | 50.92 | 22,462,858 | 18,871,837 | 84.01 |
| Drosophila subobscura (Fruit fly, 14011-0131.10) (Drosophila subobscura) | UCBerk_Dsub_1.0 | 126,248,017 | 73,074,528 | 57.88 | 22,568,562 | 18,853,205 | 83.54 |
| Drosophila obscura (Fruit fly, BZ-5 IFL) (Drosophila obscura) | ASM1815110v1 | 179,834,232 | 76,127,218 | 42.33 | 23,961,368 | 18,913,999 | 78.94 |
| Drosophila tropicalis (Pomace flies, 14030-0801.00) (Drosophila tropicalis) | ASM1815108v1 | 211,057,351 | 57,818,343 | 27.39 | 23,293,119 | 18,180,261 | 78.05 |
| Drosophila willistoni (Fruit fly, 14030-0811.24) (Drosophila willistoni) | UCI_dwil_1.1 | 246,985,538 | 58,944,871 | 23.87 | 24,051,651 | 18,296,672 | 76.07 |
| Drosophila innubila (Fruit fly, TH190305) (Drosophila innubila) | UK_Dinn_1.0 | 167,978,031 | 52,610,658 | 31.32 | 22,417,965 | 17,407,824 | 77.65 |
| Drosophila sulfurigaster albostrigata (Flies, 15112-1811.04) (Drosophila sulfurigaster albostrigata) | ASM2355843v2 | 168,251,146 | 51,348,297 | 30.52 | 23,701,404 | 17,651,967 | 74.48 |
| Drosophila albomicans (Fruit fly, 15112-1751.03) (Drosophila albomicans) | ASM965048v2 | 167,525,814 | 51,311,612 | 30.63 | 23,632,625 | 17,699,444 | 74.89 |
| Drosophila nasuta (Pomace flies, 15112-1781.00) (Drosophila nasuta) | ASM2355853v2 | 171,766,801 | 51,316,081 | 29.88 | 23,705,509 | 17,722,652 | 74.76 |
| Drosophila grimshawi (Fruit fly, 15287-2541.00) (Drosophila grimshawi) | ASM1815329v1 | 191,382,978 | 51,923,553 | 27.13 | 21,946,383 | 17,513,419 | 79.80 |
| Drosophila virilis (Pomace flies, 15010-1051.87) (Drosophila virilis) | Dvir_AGI_RSII_ME | 189,440,335 | 49,937,489 | 26.36 | 23,725,076 | 17,671,001 | 74.48 |
| Drosophila novamexicana (Pomace flies, 15010-1031.04,08,12) (Drosophila novamexicana) | DnovRS2.1 | 177,223,868 | 49,838,719 | 28.12 | 22,175,085 | 17,245,171 | 77.77 |
| Drosophila montana (Pomace flies, Dmon_TW-CO22-7) (Drosophila montana) | ASM3504440v1 | 191,421,679 | 50,926,205 | 26.60 | 22,833,926 | 17,652,810 | 77.31 |
| Drosophila hydei (Fruit fly, 15085-1641.00,03,60) (Drosophila hydei) | DhydRS2 | 153,741,574 | 49,122,971 | 31.95 | 22,456,330 | 17,360,195 | 77.31 |
| Drosophila navojoa (Fruit fly, navoj_Jal97) (Drosophila navojoa) | UFRJ_Dnav_4.2 | 147,357,603 | 49,872,342 | 33.84 | 21,446,017 | 17,330,440 | 80.81 |
| Drosophila mojavensis (Fruit fly, 15081-1352.22) (Drosophila mojavensis) | ASM1815372v1 | 163,170,721 | 50,842,745 | 31.16 | 22,712,740 | 17,655,585 | 77.73 |
| Drosophila arizonae (Fruit fly, ariz_Son04) (Drosophila arizonae) | ASM165402v1 | 141,386,800 | 47,412,690 | 33.53 | 20,891,520 | 16,741,643 | 80.14 |
| Drosophila busckii (Fruit fly, San Diego stock center stock number 13000-0081.31) (Drosophila busckii) | ASM1175060v1 | 118,492,362 | 44,096,302 | 37.21 | 21,064,819 | 16,880,505 | 80.14 |
| Coremacera marginata (Sieve-winged Snailkiller, reference) (Coremacera marginata) | idCorMarg1.1 | 979,662,365 | 16,785,947 | 1.71 | 22,145,387 | 13,483,584 | 60.89 |
| Myopa tessellatipennis - (flies, reference) (Myopa tessellatipennis) | idMyoTess1.2 | 249,257,482 | 16,492,009 | 6.62 | 20,547,688 | 13,274,187 | 64.60 |
| Machimus atricapillus (Kite-tailed Robberfly, reference) (Machimus atricapillus) | idMacAtri3.1 | 268,627,744 | 15,504,905 | 5.77 | 18,227,504 | 11,057,864 | 60.67 |
| Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton) (Bactrocera neohumeralis) | APGP_CSIRO_Bneo_wtdbg2_racon_allhic_juicebox.fasta_v2 | 577,342,536 | 18,418,178 | 3.19 | 24,088,795 | 14,521,719 | 60.28 |
Block size distribution
| Size range | All 90,968 alignment blocks | |
|---|---|---|
| # blocks | Total size (incl. gaps) | |
| 10 bp - 100 bp | 7,332 |
288.1 kb |
| 100 bp - 1 kb | 19,586 |
9.7 Mb |
| 1 kb - 10 kb | 60,444 |
225.4 Mb |
| 10 kb - 100 kb | 3,606 |
47.9 Mb |
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