What's New in Release 62

• Updated gene sets
  • Stylophora pistillata (Hood coral, GCA_002571385.2)
• Dropped
  • Galleria mellonella (GCA_003640425.2)
• Assembly updated
  • Eufriesea mexicana (Mexican orchid bee, GCA_001483705.1 -> GCA_001483705.2)
  • Myopa tessellatipennis (Flies, GCA_943737955.1 -> GCA_943737955.2)
• New species
  • Amblyomma americanum (Lone Star tick, GCA_030143305.2)
  • Bactrocera oleae (Olive fruit fly, GCA_001188975.4)
  • Bradysia coprophila (Black fungus gnats, GCA_014529535.1)
  • Contarinia nasturtii (Swede midge, GCA_009176525.2)
  • Drosophila montana (Pomace flies, GCA_035044405.1)
  • Drosophila nasuta (Pomace flies, GCA_023558535.2)
  • Drosophila novamexicana (Pomace flies, GCA_003285875.3)
  • Drosophila serrata (Pomace flies, GCA_002093755.2)
  • Drosophila sulfurigaster albostrigata (Flies, GCA_023558435.2)
  • Drosophila tropicalis (Pomace flies, GCA_018151085.1)
  • Lucilia sericata (Common green bottle fly, GCA_015586225.1)
  • Ornithodoros turicata (Softbacked ticks, GCA_037126465.1)
  • Photinus pyralis (Common eastern firefly, GCA_008802855.1)
  • Schmidtea mediterranea (Freshwater planarian, GCA_045838255.1)
  • Schmidtea mediterranea (Freshwater planarian, GCA_045838265.1)
  • Schmidtea nova (Freshwater planarian, GCA_044892505.1)
  • Schmidtea polychroa (Freshwater planarian, GCA_044892525.1)
  • Steinernema hermaphroditum (Nematode, GCA_030435675.2)
  • Tenebrio molitor (Darkling ground beetles, GCA_907166875.3)
  • Vespa mandarinia (Asian giant hornet, GCA_014083535.1)
• New assembly for existing species
  • Amyelois transitella (Moths, GCA_032362555.1)
  • Bactrocera dorsalis (Oriental fruit fly, GCA_023373825.1)
  • Bicyclus anynana (Squinting bush brown, GCA_947172395.1)
  • Branchiostoma lanceolatum (Amphioxus, GCA_035083965.1)
  • Caenorhabditis remanei (Nematode, GCA_010183535.1)
  • Danaus plexippus (monarch butterfly, GCA_018135715.1)
  • Dendroctonus ponderosae (Mountain pine beetle, GCA_020466585.2)
  • Drosophila bipectinata (Pomace flies, GCA_030179905.2)
  • Drosophila elegans (Pomace flies, GCA_018152505.1)
  • Drosophila kikkawai (Pomace flies, GCA_030179895.2)
  • Drosophila suzukii (Pomace flies, GCA_037355615.1)
  • Drosophila takahashii (Pomace flies, GCA_030179915.2)
  • Drosophila virilis (Pomace flies, GCA_030788295.1)
  • Helicoverpa armigera (Cotton bollworm, GCA_030705265.1)
  • Hydra vulgaris (Swiftwater hydra, GCA_038396675.1)
  • Linepithema humile (Argentine ant, GCA_040581485.1)
  • Lytechinus pictus (Painted urchin, GCA_037042905.1)
  • Mercenaria mercenaria (Northern quahog, GCA_021730395.1)
  • Musca domestica (House fly, GCA_030504385.2)
  • Necator americanus (New World hookworm, GCA_031761385.1)
  • Nematostella vectensis (Starlet sea anemone, GCA_932526225.1)
  • Ostrea edulis (Mud oyster, GCA_947568905.1)
  • Sarcoptes scabiei (Itch mite, GCA_020844145.1)
  • Stomoxys calcitrans (Stable fly, GCA_963082655.1)
  • Tribolium castaneum (Red flour beetle, GCA_031307605.1)
• Variation updated
  • Anopheles gambiae (GCA_000005575.1) - Fixes known bug reported in Release 61
• Compara reference updates
  • Amyelois transitella - Updated to GCA_032362555.1, replaces GCA_001186105.1
  • Bactrocera dorsalis - Updated to GCA_023373825.1, replaces GCA_000789215.2
  • Bicyclus anynana - Updated to GCA_947172395.1, replaces GCA_900239965.1
  • Dendroctonus ponderosae - Updated to GCA_020466585.2, replaces GCA_000355655.1
  • Drosophila bipectinata - Updated to GCA_030179905.2, replaces GCA_000236285.2
  • Drosophila elegans - Updated to GCA_018152505.1, replaces GCA_000224195.2
  • Drosophila kikkawai - Updated to GCA_030179895.2, replaces GCA_018152535.1
  • Drosophila suzukii - Updated to GCA_037355615.1, replaces GCA_013340165.1
  • Drosophila takahashii - Updated to GCA_030179915.2, replaces GCA_018152695.1
  • Drosophila virilis - Updated to GCA_030788295.1, replaces GCA_003285735.2
  • Helicoverpa armigera - Updated to GCA_030705265.1, replaces GCA_023701775.1
  • Linepithema humile - Updated to GCA_040581485.1, replaces GCA_000217595.1
  • Musca domestica - Updated to GCA_030504385.2, replaces GCA_000371365.1
  • Stomoxys calcitrans - Updated to GCA_963082655.1, replaces GCA_001015335.1
  • Tribolium castaneum - Updated to GCA_031307605.1, replaces GCA_000002335.3
• Planned updates
• Updated BioMarts for all gene and variation data
• Updated pan-taxonomic gene trees and homologies

Archive sites

Archive of release 59 of EnsemblMetazoa: eg59-metazoa.ensembl.org (May 2024)

Archive of release 56 of EnsemblMetazoa: eg56-metazoa.ensembl.org (Feb 2023)

Archive of release 52 of EnsemblMetazoa: eg52-metazoa.ensembl.org (Dec 2021)

Archive of release 49 of EnsemblMetazoa: eg49-metazoa.ensembl.org (Dec 2020)

Funding

Ensembl Metazoa receives funding from Infravec2, to serve as a data delivery mechanism for that project. Infravec2 is an international and interdisciplinary research project on insect vectors of human and animal disease, including mosquitoes, sandflies and other flies. This project has received funding from the European Unions Horizon 2020 research and innovation programme under grant agreement No 731060.

The biting midge genome resequencing and annotation is funding by a grant from the Bioinformatics and Biological Resources Fund of the United Kingdom Biotechnology and Biological Sciences Research Council (grant number BB/M028372/1) to The Pirbright Institute and the European Bioinformatics Institute.

The Branchiostoma lanceolatum (amphioxus) genome is provided by Corbel, an initiative of thirteen biological and medical research infrastructures creating a platform for harmonised access to biological and medical samples, technologies and data services. This project receives funding from the European Unions Horizon 2020 research and innovation programme under grant agreement No 654248.

Ensembl Genomes is developed by EMBL-EBI and is powered by the Ensembl software system for the analysis and visualisation of genomic data. For details of our funding please click here.