Adineta vaga (Rotifer) Assembly and Gene Annotation
About Adineta vaga
Adineta vaga is a bdelloid rotifer, a class of rotifers found in
freshwater habitats all over the world. There are over 450 described
species of bdelloid rotifers, distinguished from each other mainly on
the basis of morphology. The main characteristics that distinguish
bdelloids from related groups of rotifers are exclusively
parthenogenetic reproduction and the ability to survive in dry, harsh
environments by entering a state of desiccation-induced dormancy
(anhydrobiosis) at any life stage. They are often referred to as
"ancient asexuals
" due to their unique asexual history that spans back
to over 25 million years ago through fossil evidence.
(Text from Wikipedia, the free encyclopaedia.)
Picture credit (CC-BY-NC 3.0): Rotifer World Catalog
Assembly
The Adineta vaga genome was sequenced and assembled in a collaboration between the University of Namur, the Marine Biological Laboratory, Genoscope, and others [1].
Annotation
Ensembl Metazoa displays the v2 gene set provided by Genoscope.
References
- Genomic evidence for ameiotic evolution in the bdelloid rotifer
Adineta vaga.
Flot J-F et al.. 2013. Nature. 500:453457.
Statistics
Summary
Assembly | AMS_PRJEB1171_v1, INSDC Assembly GCA_000513175.1, Sep 2015 |
Database version | 113.1 |
Golden Path Length | 217,933,776 |
Genebuild by | Genoscope |
Genebuild method | Import |
Data source | Genoscope |
Gene counts
Coding genes | 49,300 |
Non coding genes | 737 |
Small non coding genes | 736 |
Long non coding genes | 1 |
Gene transcripts | 50,037 |