Ceratitis capitata (Mediterranean fruit fly) (Ccap_2.0)

Ceratitis capitata (Mediterranean fruit fly) Assembly and Gene Annotation

About Ceratitis capitata

Ceratitis capitata, commonly known as the Mediterranean fruit fly (Ceratitis capitata) or medfly is a yellow and brown fly native to sub-Saharan Africa. C. capitata has no near relatives in the Western Hemisphere and is considered to be one of the most destructive fruit pests in the world. There have been occasional medfly infestations in the states of California, Florida, and Texas requiring extensive eradication efforts to prevent the fly from establishing itself in the US.

Picture credit: Creative Commons Attribution-Share Alike 3.0 via Wikimedia Commons (Image source)

Taxonomy ID 7213

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_000347755.3].

The total length of the assembly is 436490799 bp contained within 2355 scaffolds. The scaffold N50 value is 1665634, the scaffold L50 value is 75. Assembly gaps span 700227 bp. The GC% content of the assembly is 35.0%.

Annotation

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v103. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

Statistics

Summary

AssemblyCcap_2.0, INSDC Assembly GCA_000347755.4,
Database version111.1
Golden Path Length436,490,799
Genebuild byNCBI
Genebuild methodImport
Data sourceThe BCM-HGSC i5K pilot project

Gene counts

Coding genes12,563
Non coding genes1,588
Small non coding genes511
Long non coding genes1,068
Misc non coding genes9
Pseudogenes109
Gene transcripts25,469