Crassostrea angulata (Portuguese oyster, pt1a10) Assembly and Gene Annotation
About Crassostrea angulata
The Portuguese oyster is a species of oyster found in the southwest Iberian Peninsula, closely related to the Pacific oyster. Although first identified as a native European species, genetic studies have suggested the Portuguese oyster originated from the Pacific coast of Asia and was introduced to Europe by Portuguese trading ships in the 16th century. The species is usually found in coastal river mouths and estuaries.
Picture credit: Creative Commons Attribution-Share Alike 3.0 via Wikimedia Commons (Image source) Taxonomy ID 558553
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_025612915.2].
The total length of the assembly is 624273838 bp contained within 410 scaffolds. The scaffold N50 value is 60476782, the scaffold L50 value is 5. Assembly gaps span 131500 bp. The GC% content of the assembly is 33.5%.
Annotation
The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_025612915.2.
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release version is not defined for GCA_025612915.2 assembly. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
Statistics
Summary
Assembly | ASM2561291v2, INSDC Assembly GCA_025612915.2, |
Database version | 113.1 |
Golden Path Length | 624,273,838 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | Ocean University of China |
Gene counts
Coding genes | 29,810 |
Non coding genes | 4,266 |
Small non coding genes | 1,076 |
Long non coding genes | 3,190 |
Pseudogenes | 4,077 |
Gene transcripts | 59,731 |