Crassostrea angulata (Portuguese oyster, pt1a10) (ASM2561291v2)

Crassostrea angulata (Portuguese oyster, pt1a10) Assembly and Gene Annotation

About Crassostrea angulata

The Portuguese oyster is a species of oyster found in the southwest Iberian Peninsula, closely related to the Pacific oyster. Although first identified as a native European species, genetic studies have suggested the Portuguese oyster originated from the Pacific coast of Asia and was introduced to Europe by Portuguese trading ships in the 16th century. The species is usually found in coastal river mouths and estuaries.

Picture credit: Creative Commons Attribution-Share Alike 3.0 via Wikimedia Commons (Image source) Taxonomy ID 558553

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_025612915.2].

The total length of the assembly is 624273838 bp contained within 410 scaffolds. The scaffold N50 value is 60476782, the scaffold L50 value is 5. Assembly gaps span 131500 bp. The GC% content of the assembly is 33.5%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_025612915.2.

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release version is not defined for GCA_025612915.2 assembly. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

Statistics

Summary

AssemblyASM2561291v2, INSDC Assembly GCA_025612915.2,
Database version111.1
Golden Path Length624,273,838
Genebuild byNCBI
Genebuild methodImport
Data sourceOcean University of China

Gene counts

Coding genes29,810
Non coding genes4,266
Small non coding genes1,076
Long non coding genes3,190
Pseudogenes4,077
Gene transcripts59,731