Daphnia magna (Fresh water planktonic, NIES) Assembly and Gene Annotation
About Daphnia magna
Daphnia magna is a small planktonic crustacean that belongs to the subclass Phyllopoda.
It inhabits a variety of freshwater environments and is broadly distributed throughout the northern hemisphere, and in South Africa.
D. magna is used in many different fields of research, such as ecotoxicology, population genetics, the evolution of sex, phenotypic plasticity, ecophysiology (including global change biology) and host-parasite interactions.
Picture credit: Creative Commons Attribution-Share Alike 4.0 via Wikimedia Commons (Image source)
Taxonomy ID 35525
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_020631705.2].
The total length of the assembly is 161467056 bp contained within 309 scaffolds. The scaffold N50 value is 12546303, the scaffold L50 value is 6. Assembly gaps span 12400 bp.
Annotation
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v101. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
Statistics
Summary
Assembly | ASM2063170v1.1, INSDC Assembly GCA_020631705.2, |
Database version | 113.1 |
Golden Path Length | 161,467,056 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | Sungkyunkwan University |
Gene counts
Coding genes | 16,891 |
Non coding genes | 9,241 |
Small non coding genes | 4,557 |
Long non coding genes | 4,581 |
Misc non coding genes | 103 |
Pseudogenes | 2,203 |
Gene transcripts | 47,831 |