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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
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ID History
- Gene history

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DB built by FlyBase

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Gene: Sdc FBgn0010415

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Description

Syndecan

Gene Synonyms

Location

Primary_assembly 2R: 21,392,402-21,481,176 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 9 transcripts (splice variants) and 60 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sdc-RJ	FBtr0342894	2770	495aa	FBpp0309695	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGQ9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Sdc-RI	FBtr0342893	3982	494aa	FBpp0309694	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZN0	-	-
Sdc-RK	FBtr0342895	3466	322aa	FBpp0309696	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Sdc-RG	FBtr0305897	2944	75aa	FBpp0297065	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K862	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Sdc-RL	FBtr0474169	2482	408aa	FBpp0423168	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4P7VJV5	-	-
Sdc-RA	FBtr0071706	2482	399aa	FBpp0071623	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P49415	-	-
Sdc-RH	FBtr0342892	2245	266aa	FBpp0309693	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LG79	-	-
Sdc-RB	FBtr0071707	1985	226aa	FBpp0071624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Sdc-RD	FBtr0273206	1869	398aa	FBpp0271714	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZM9	-	-

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Summary

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