Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton) (APGP_CSIRO_Bneo_wtdbg2_racon_allhic_juicebox.fasta_v2)

Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton) Assembly and Gene Annotation

About Bactrocera neohumeralis

Bactrocera neohumeralis is a highly destructive and major biosecurity/quarantine pest of fruits and vegetables in the tropical and subtropical regions in the South Pacific and Australia [1].

Picture credit (related sp. B. dorsalis): Public domain via Wikimedia Commons (Image source)

Taxonomy ID 98809

More information General information about this species can be found in Fruit Fly ID Australia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_024586455.1].

The total length of the assembly is 577326612 bp contained within 5158 scaffolds. The scaffold N50 value is 78989042, the scaffold L50 value is 4. The GC% content of the assembly is 36.5%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_024586455.1.

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

References

  1. Wan et al. Predicting the potential geographic distribution of Bactrocera bryoniae and Bactrocera neohumeralis (Diptera: Tephritidae) in China using MaxEnt ecological niche modeling, Journal of Integrative Agriculture,Volume 19, Issue 8, 2020, doi: 10.1016/S2095-3119(19)62840-6.

Statistics

Summary

AssemblyAPGP_CSIRO_Bneo_wtdbg2_racon_allhic_juicebox.fasta_v2, INSDC Assembly GCA_024586455.2,
Database version112.1
Golden Path Length577,342,536
Genebuild byNCBI
Genebuild methodImport
Data sourceApplied Genomics Initiative Consortium

Gene counts

Coding genes13,929
Non coding genes2,447
Small non coding genes598
Long non coding genes1,849
Pseudogenes1,026
Gene transcripts30,423