Despite the great ecological relevance of the soil community, insight into molecular processes underlying the ecology and evolution of soil invertebrates is largely unknown. Collembola (springtails) are important detritivorous hexapods that inhabit the soil and its litter layer. Orchesella cincta is an obligate sexually reproducing species and populations live in the soil litter layer feeding on decaying organic material. O. cincta populations living in metal contaminated areas, such as mining sites, have evolved tolerance to heavy metals.
Further details about Orchesella cincta can be obtained from the genome portal (www.collembolomics.nl) at the Department of Ecological Science, Vrije Universiteit Amsterdam.
Taxonomy ID 48709
Data source European Nucleotide Archive
Genome assembly: ASM171814v1
More information and statistics
Download DNA sequence (FASTA)
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
Download alignments (EMF)
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor: