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Tigriopus californicus (Copepod, San Diego) (Tcal_SD_v2.1) ▼

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About Tigriopus californicus

T. californicus is a harpacticoid copepod that shows extensive population divergence and is becoming a model for understanding allopatric differentiation and the early stages of speciation [1].

Picture credit: Greg Rouse (image source: The Burton Lab site, Scripps Institution of Oceanography, UCSD Marine Biology Research Division)

Taxonomy ID 6832

Data source Scripps Institution of Oceanography

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Genome assembly: Tcal_SD_v2.1

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Example geneExample transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Example gene tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor