Contarinia nasturtii (Swede midge, CC-2019) (AAFC_CNas_1.1)

Contarinia nasturtii (Swede midge, CC-2019) Assembly and Gene Annotation

About Contarinia nasturtii

Contarinia nasturtii, the swede midge (Contarinia nasturtii), is a small fly, the larvae of which infest brassica plants, causing twisting and distortion of the leaf stems and foliage including death of the growing point in seedlings, or damage to developing flower heads. It is native to Europe and Turkey, and has been introduced into North America where it is regarded as an invasive species.

Picture credit: Creative Commons Attribution-Share Alike 3.0 via Wikimedia Commons (Image source) Taxonomy ID 265458

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_009176525.2].

The total length of the assembly is 185885008 bp contained within 5545 scaffolds. The scaffold N50 value is 4652070, the scaffold L50 value is 13. The GC% content of the assembly is 34.0%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_009176525.2.

Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by metazoa.

Statistics

Summary

AssemblyAAFC_CNas_1.1, INSDC Assembly GCA_009176525.2,
Database version115.1
Golden Path Length185,885,008
Genebuild byNCBI RefSeq
Genebuild methodImport
Data sourceAgriculture Canada

Gene counts

Coding genes14,889
Non coding genes1,128
Small non coding genes252
Long non coding genes876
Pseudogenes104
Gene transcripts26,856