Danaus plexippus plexippus (Monarch butterfly, F-2) Assembly and Gene Annotation
About Danaus plexippus
Each autumn millions of the migratory Monarch Butterfly, Danaus plexippus, undergo a long-distance migration of up to 4,000 km from eastern North America to their wintering grounds in central Mexico. During this migration, the Monarch uses a time-compensated sun compass to allow them to maintain a southerly direction. In addition to the great opportunities for studying circadian clockwork and the molecular basis of long-distance migration, the mimicry complex formed by the Monarch and the Viceroy butterflies offers insights into adaptive evolution.[1]
Picture credit (Creative Commons BY 2.0): Thomas Bresson 2010
Assembly
The assembly presented is the Dplex_v4 assembly submitted to INSDC with the assembly accession GCA_009731565.1.
Annotation
Ensembl Metazoa displays the genes from NCBI Danaus plexippus plexippus Annotation Release 100. Small RNA features, protein features and cross-references have been annotated by Ensembl Metazoa.
References
- The monarch butterfly genome yields insights into long-distance
migration.
Zhan S, Merlin C, Boore JL, Reppert SM. 2011. Cell. 147:1171-1185. - Dichotomy of Dosage Compensation along the Neo Z Chromosome of the Monarch Butterfly.
Gu L, Reilly PF, Lewis JJ, et al. Current Biology : CB. 2019 Dec;29(23):4071-4077.e3. DOI: 10.1016/j.cub.2019.09.056. PMID: 31735674; PMCID: PMC6901105.
Statistics
Summary
| Assembly | Dplex_v4, INSDC Assembly GCA_009731565.1, |
| Database version | 115.4 |
| Golden Path Length | 248,676,414 |
| Genebuild by | NCBI |
| Genebuild method | Import |
| Data source | Princeton University |
Gene counts
| Coding genes | 13,105 |
| Non coding genes | 1,359 |
| Small non coding genes | 670 |
| Long non coding genes | 689 |
| Pseudogenes | 205 |
| Gene transcripts | 21,564 |


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