Drosophila subpulchrella (Fruit fly, 33 F10 #4) (RU_Dsub_v1.1)

Drosophila subpulchrella (Fruit fly, 33 F10 #4) Assembly and Gene Annotation

About Drosophila subpulchrella

Drosophila is a genus of flies, belonging to the family Drosophilidae, whose members are often called "small fruit flies" or pomace flies, vinegar flies, or wine flies, a reference to the characteristic of many species to linger around overripe or rotting fruit. They should not be confused with the Tephritidae, a related family, which are also called fruit flies; tephritids feed primarily on unripe or ripe fruit, with many species being regarded as destructive agricultural pests, especially the Mediterranean fruit fly.

Picture credit (related sp D. suzukii edited to single specimen, no scale): Shane F. McEvey, Australian Museum Creative Commons Attribution 4.0 via Wikimedia Commons (Image source)

Taxonomy ID 1486046

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_014743375.2].

The total length of the assembly is 265153789 bp contained within 299 scaffolds. The scaffold N50 value is 11590999, the scaffold L50 value is 6. The GC% content of the assembly is 40.5%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_014743375.2.

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

References

  1. Takamori et al. 2006. Drosophila subpulchrella, a new species of the Drosophila suzukii species subgroup from Japan and China (Diptera: Drosophilidae). Entomological Science, 9(1), pp.121-128. doi: 10.1111/j.1479-8298.2006.00159.x

Statistics

Summary

AssemblyRU_Dsub_v1.1, INSDC Assembly GCA_014743375.2,
Database version112.1
Golden Path Length265,153,789
Genebuild byNCBI
Genebuild methodImport
Data sourceThe Rockefeller University

Gene counts

Coding genes15,028
Non coding genes2,481
Small non coding genes1,896
Long non coding genes585
Pseudogenes403
Gene transcripts29,440