Halichondria panicea (Sponges) - GCF_963675165.1 [RefSeq annotation] (odHalPani1.1)

Halichondria panicea (Sponges) - GCF_963675165.1 [RefSeq annotation] Assembly and Gene Annotation

About Halichondria panicea

Halichondria panicea, commonly known as the breadcrumb sponge, is a species of sea sponge belonging to the family Halichondriidae. This is an abundant sponge of coastal areas of the North Atlantic and the Mediterranean Sea ranging from the intertidal zone to a recorded depth of over 550 m. It is also found in the intertidal zone of the coast of the northern part of the North Island of New Zealand. It is very tolerant of a wide range of coastal habitats, including strong currents, high salinity and exposure to powerful wave action. Its only requirement is a rocky substrate which can include small cobbles.

Picture credit: Creative Commons Attribution 2.0 via Wikimedia Commons (Image source) Taxonomy ID 6063

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_963675165.1].

The total length of the assembly is 131456761 bp contained within 39 scaffolds. The scaffold N50 value is 7091591, the scaffold L50 value is 8. The GC% content of the assembly is 41.5%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_963675165.1.

metazoa displaying genes imported from NCBI RefSeq annotation release vGCF_963675165.1-RS_2024_04.html. Small RNA features, protein features, BLAST hits and cross-references have been computed by metazoa.

Statistics

Summary

AssemblyodHalPani1.1, INSDC Assembly GCA_963675165.1,
Database version114.1
Golden Path Length131,456,761
Genebuild byNCBI
Genebuild methodImport
Data sourceWellcome Sanger Institute, Darwin Tree of Life Programme

Gene counts

Coding genes17,301
Non coding genes4,109
Small non coding genes837
Long non coding genes3,272
Pseudogenes352
Gene transcripts33,619