Magallana gigas (Bivalves) - GCF_963853765.1 [RefSeq annotation] (xbMagGiga1.1)

Magallana gigas (Bivalves) - GCF_963853765.1 [RefSeq annotation] Assembly and Gene Annotation

About Magallana gigas

The Pacific oyster (Magallana gigas), Japanese oyster, or Miyagi oyster is an oyster native to the Pacific coast of Asia. It has become an introduced species in North America, Australia, Europe, and New Zealand.

Picture credit: Creative Commons Attribution-Share Alike 3.0 via Wikimedia Commons (Image source) Taxonomy ID 29159

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_963853765.1].

The total length of the assembly is 563985803 bp contained within 29 scaffolds. The scaffold N50 value is 57274926, the scaffold L50 value is 5. The GC% content of the assembly is 33.5%.

Annotation

metazoa displaying genes linked to the assembly with accession GCA_963853765.1.

Genomic assembly deposited to the INSDC by Wellcome Sanger Institute. Genome annotation performed by Ensembl as part of the partnership with the Darwin Tree of Life (DToL) project.

Genome annotation was obtained using re-engineered versions of our Gene Annotation System Aken et al. with refinements implemented for non-vertebrate genomic annotation.

Find more information regarding DToL and Ensembl partnership here.

Statistics

Summary

AssemblyxbMagGiga1.1, INSDC Assembly GCA_963853765.1,
Database version114.1
Golden Path Length563,985,803
Genebuild byNCBI
Genebuild methodImport
Data sourceWellcome Sanger Institute, Darwin Tree of Life Programme

Gene counts

Coding genes26,073
Non coding genes6,991
Small non coding genes909
Long non coding genes5,725
Misc non coding genes357
Pseudogenes267
Gene transcripts61,255