Platynereis dumerilii (Dumeril's clam worm, lab) - GCA_026936325.1 [Community annotation] (EMBL_pdum_1.0)

Platynereis dumerilii (Dumeril's clam worm, lab) - GCA_026936325.1 [Community annotation] Assembly and Gene Annotation

About *Platynereis dumerilii *

Platynereis dumerilii is a species of annelid polychaete worm. It was originally placed into the genus Nereis and later reassigned to the genus Platynereis. Platynereis dumerilii lives in coastal marine waters from temperate to tropical zones. It can be found in a wide range from the Azores, the Mediterranean, in the North Sea, the English Channel, and the Atlantic down to the Cape of Good Hope, in the Black Sea, the Red Sea, the Persian Gulf, the Sea of Japan, the Pacific, and the Kerguelen Islands. Platynereis dumerilii is today an important lab animal, it is considered a living fossil, and it is used in many phylogenetic studies as a model organism.

Picture credit: Martin Gühmann Creative Commons Attribution 4.0 via Wikimedia Commons (Image source) Taxonomy ID 6359

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_026936325.1].

The total length of the assembly is 1469601079 bp contained within 330 scaffolds. The scaffold N50 value is 54798709, the scaffold L50 value is 8. The GC% content of the assembly is 37.5%.

Annotation

Annotation of the EMBL_pdum_1.0 assembly was carried out by "The Platynereis Community" at the EMBL Developmental Biology unit.

The set of gene models presented (genebuild EMBLpdum1v0.0, released September 2024) are provided by the research community.

Small RNA features, protein features, BLAST hits and cross-references have been computed by metazoa.

Statistics

Summary

AssemblyEMBL_pdum_1.0, INSDC Assembly GCA_026936325.1,
Database version114.1
Golden Path Length1,469,601,079
Genebuild byDevelopmental Biology, EMBL
Genebuild methodImport
Data sourceDevelopmental Biology, EMBL

Gene counts

Coding genes28,431
Non coding genes2,739
Small non coding genes2,682
Long non coding genes57
Gene transcripts94,162