Bactrocera neohumeralis (Lesser Queensland fruit fly, Rockhampton) Assembly and Gene Annotation
About Bactrocera neohumeralis
Bactrocera neohumeralis is a highly destructive and major biosecurity/quarantine pest of fruits and vegetables in the tropical and subtropical regions in the South Pacific and Australia [1].
Picture credit (related sp. B. dorsalis): Public domain via Wikimedia Commons (Image source)
Taxonomy ID 98809
More information General information about this species can be found in Fruit Fly ID Australia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_024586455.1].
The total length of the assembly is 577326612 bp contained within 5158 scaffolds. The scaffold N50 value is 78989042, the scaffold L50 value is 4. The GC% content of the assembly is 36.5%.
Annotation
The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_024586455.1.
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
References
- Wan et al. Predicting the potential geographic distribution of Bactrocera bryoniae and Bactrocera neohumeralis (Diptera: Tephritidae) in China using MaxEnt ecological niche modeling, Journal of Integrative Agriculture,Volume 19, Issue 8, 2020, doi: 10.1016/S2095-3119(19)62840-6.
Statistics
Summary
Assembly | APGP_CSIRO_Bneo_wtdbg2_racon_allhic_juicebox.fasta_v2, INSDC Assembly GCA_024586455.2, |
Database version | 113.1 |
Golden Path Length | 577,342,536 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | Applied Genomics Initiative Consortium |
Gene counts
Coding genes | 13,929 |
Non coding genes | 2,447 |
Small non coding genes | 598 |
Long non coding genes | 1,849 |
Pseudogenes | 1,026 |
Gene transcripts | 30,423 |