Bombus affinis (Rusty patched bumble bee, iyBomAffi1) (iyBomAffi1.2)

Bombus affinis (Rusty patched bumble bee, iyBomAffi1) Assembly and Gene Annotation

About Bombus affinis

Bombus affinis, commonly known as the rusty patched bumble bee, is a species of bumblebee endemic to North America. Its historical range in North America has been throughout the east and upper Midwest of the United States, north to Ontario, Canada, where it is considered a "species at risk", east to Quebec, south to Georgia, and west to the Dakotas. Its numbers have declined in 87% of its historical habitat range. On January 10, 2017, the United States Fish and Wildlife Service placed B. affinis on the list of endangered species, making the rusty patched bumblebee the first bee to be added to the list in the continental United States.

Picture credit: Public domain via Wikimedia Commons (Image source) Taxonomy ID 309941

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_024516045.1].

The total length of the assembly is 365123313 bp contained within 858 scaffolds. The scaffold N50 value is 12331690, the scaffold L50 value is 11. The GC% content of the assembly is 37.5%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_024516045.1.

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

Statistics

Summary

AssemblyiyBomAffi1.2, INSDC Assembly GCA_024516045.2,
Database version113.1
Golden Path Length365,123,313
Genebuild byNCBI
Genebuild methodImport
Data sourceUnited States Department of Agriculture

Gene counts

Coding genes10,718
Non coding genes4,253
Small non coding genes582
Long non coding genes3,671
Pseudogenes281
Gene transcripts36,169