Bombus affinis (Rusty patched bumble bee, iyBomAffi1) Assembly and Gene Annotation
About Bombus affinis
Bombus affinis, commonly known as the rusty patched bumble bee, is a species of bumblebee endemic to North America. Its historical range in North America has been throughout the east and upper Midwest of the United States, north to Ontario, Canada, where it is considered a "species at risk", east to Quebec, south to Georgia, and west to the Dakotas. Its numbers have declined in 87% of its historical habitat range. On January 10, 2017, the United States Fish and Wildlife Service placed B. affinis on the list of endangered species, making the rusty patched bumblebee the first bee to be added to the list in the continental United States.
Picture credit: Public domain via Wikimedia Commons (Image source) Taxonomy ID 309941
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_024516045.1].
The total length of the assembly is 365123313 bp contained within 858 scaffolds. The scaffold N50 value is 12331690, the scaffold L50 value is 11. The GC% content of the assembly is 37.5%.
Annotation
The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_024516045.1.
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
Statistics
Summary
Assembly | iyBomAffi1.2, INSDC Assembly GCA_024516045.2, |
Database version | 113.1 |
Golden Path Length | 365,123,313 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | United States Department of Agriculture |
Gene counts
Coding genes | 10,718 |
Non coding genes | 4,253 |
Small non coding genes | 582 |
Long non coding genes | 3,671 |
Pseudogenes | 281 |
Gene transcripts | 36,169 |