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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: cmtr-1 WBGene00013160

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Description

Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Source:NCBI gene;Acc:175156]

Location

Chromosome II: 15,026,114-15,037,854 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 4 transcripts (splice variants), 77 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y53F4B.13a.1	3661	918aa	Y53F4B.13a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAA5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	Y53F4B.13b.1	2694	897aa	Y53F4B.13b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAA5	-	-
-	Y53F4B.13c.1	1848	615aa	Y53F4B.13c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAA5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y53F4B.13d.1	1785	594aa	Y53F4B.13d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NAA5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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