Cimex lectularius (Bed bug, Harlan) Assembly and Gene Annotation
About Cimex lectularius
Cimex lectularius, the common bedbug, is a parasitic insect feeding preferentially on human blood. Cimex is cosmopolitan, found throughout the world in association with human populations. Cimex is not thought to be a vector although recent studies have shown that it can transmit Trypanosoma cruzi, the pathogen for Chagas disease in mice.
Harlan strain
Strain chosen for genome sequence. Fort Dix colony established and maintained in culture in Harold Harlan's lab since 1973. Sequenced material was produced from animals after five generations of single pair matings.
Sources: * VectorBase * NCBI BioSample SAMN02649412 * BCM-HGSC Bed Bug Genome Project
Picture credit:
AJC1, UK
Creative Commons Attribution 2.0 via Wikimedia Commons (Image source)
Clec_2.0 assembly
Submitted by The i5K Pilot Project.
Annotation
The annotations in Ensembl Metazoa is the NCBI Cimex lectularius Annotation Release 101.
References
- Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.
Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN et al. 2016. Nat Commun.. 7
Picture credit: VectorBase.org
Statistics
Summary
Assembly | Clec_2.0, INSDC Assembly GCA_000648675.3, |
Database version | 113.2 |
Golden Path Length | 510,848,842 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | Baylor i5k Initiative Pilot Project |
Gene counts
Coding genes | 11,949 |
Non coding genes | 2,479 |
Small non coding genes | 1,351 |
Long non coding genes | 1,125 |
Misc non coding genes | 3 |
Pseudogenes | 219 |
Gene transcripts | 28,065 |