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DB built by FlyBase

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Gene: hoe1 FBgn0041150

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Description

hoepel1

Gene Synonyms

Location

Primary_assembly 2L: 4,908,581-4,932,384 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 9 transcripts (splice variants), 55 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
hoe1-RJ	FBtr0345631	3422	846aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGX6 Q9VR47	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
hoe1-RH	FBtr0336833	3534	658aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAH7	-	-
hoe1-RE	FBtr0077399	3512	812aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I930	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
hoe1-RD	FBtr0077398	3474	812aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I930	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
hoe1-RI	FBtr0336834	3462	812aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I930	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
hoe1-RF	FBtr0077400	3458	812aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I930	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
hoe1-RB	FBtr0077395	3390	812aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I930	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
hoe1-RC	FBtr0077396	3340	846aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR47	-	-
hoe1-RA	FBtr0077397	3246	803aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Y163	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Genomic alignments

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