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DB built by FlyBase

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Gene: CkIIbeta FBgn0000259

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Description

Casein kinase II beta subunit

Gene Synonyms

Location

Primary_assembly X: 11,792,533-11,801,587 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 10 transcripts (splice variants), 78 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
CkIIbeta-RE	FBtr0073562	2392	235aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P08182	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CkIIbeta-RB	FBtr0073558	3121	215aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4C1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CkIIbeta-RH	FBtr0307896	2376	215aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4C1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CkIIbeta-RK	FBtr0333204	2006	234aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHA6 Q9NGY7 Q9NGY8 Q9NGY9	-	-
CkIIbeta-RI	FBtr0308084	1600	233aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9QPE1 M9NDU6	-	-
CkIIbeta-RC	FBtr0073560	1331	215aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4C1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CkIIbeta-RF	FBtr0100540	1043	215aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4C1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CkIIbeta-RG	FBtr0299569	997	215aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4C1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CkIIbeta-RD	FBtr0073561	966	215aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V4C1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CkIIbeta-RJ	FBtr0308085	934	233aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NGA3	-	-

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Marked-up sequence

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