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DB built by FlyBase

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Gene: mex1 FBgn0004228

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Description

midgut expression 1

Gene Synonyms

Location

Primary_assembly 3L: 15,517,424-15,519,592 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 3 transcripts (splice variants) and 34 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
mex1-RC	FBtr0334084	1034	83aa	FBpp0306209	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFC0 P23487	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
mex1-RB	FBtr0303786	741	83aa	FBpp0292798	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PV11	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
mex1-RA	FBtr0075602	710	83aa	FBpp0075355	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFC0 P23487	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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