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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: ple FBgn0005626

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Description

pale

Gene Synonyms

Location

Primary_assembly 3L: 6,713,356-6,719,525 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 62 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ple-RC	FBtr0345585	3806	579aa	FBpp0311654	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5X0J4 P18459	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ple-RB	FBtr0076957	3124	579aa	FBpp0076666	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5X0J4 P18459	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ple-RA	FBtr0076956	2911	508aa	FBpp0076665	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

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Summary

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