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DB built by FlyBase

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Gene: l(1)G0289 FBgn0028331

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Description

lethal (1) G0289

Gene Synonyms

Location

Primary_assembly X: 10,348,680-10,366,273 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 100 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
l(1)G0289-RD	FBtr0481644	2865	628aa	FBpp0428426	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
l(1)G0289-RC	FBtr0347009	3493	625aa	FBpp0312441	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2V9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
l(1)G0289-RA	FBtr0071470	2856	625aa	FBpp0071404	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2V9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
l(1)G0289-RB	FBtr0347008	2328	625aa	FBpp0312440	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2V9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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