Summary
- Splice variants
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DB built by FlyBase

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Gene: CG12992 FBgn0030846

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Gene Synonyms

Location

Primary_assembly X: 17,588,865-17,591,706 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 6 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12992-RC	FBtr0335252	1818	432aa	FBpp0307239	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHF7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12992-RE	FBtr0335254	1866	429aa	FBpp0307241	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H9ZJL5 Q5BHV2 Q9VX43	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12992-RD	FBtr0335253	1812	429aa	FBpp0307240	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VX43	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12992-RB	FBtr0300778	1372	429aa	FBpp0290002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VX43	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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