Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Metazoan Compara
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- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Molecular function
- GO: Biological process
- GO: Cellular component
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DB built by FlyBase

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Gene: CG17549 FBgn0032774

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Location

Primary_assembly 2L: 19,387,050-19,390,075 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 37 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG17549-RD	FBtr0300823	1159	287aa	FBpp0290047	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VIX6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG17549-RC	FBtr0081220	1093	262aa	FBpp0080761	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8P1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17549-RB	FBtr0081219	1084	262aa	FBpp0080760	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8P1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17549-RA	FBtr0081221	1054	287aa	FBpp0080762	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VIX6	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG17549-RE	FBtr0310645	979	262aa	FBpp0302765	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8P1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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