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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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DB built by FlyBase

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Gene: CG9812 FBgn0034860

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Location

Primary_assembly 2R: 23,412,320-23,419,684 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 3 transcripts (splice variants), 4 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9812-RD	FBtr0306150	1574	332aa	FBpp0297280	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D1Z393 Q9W1Q4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG9812-RB	FBtr0072025	1313	245aa	FBpp0071934	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVI9 Q8SX04	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9812-RE	FBtr0343207	1223	245aa	FBpp0309895	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVI9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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