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DB built by FlyBase

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Gene: CG13921 FBgn0035267

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Gene Synonyms

Location

Primary_assembly 3L: 1,746,907-1,752,390 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 6 transcripts (splice variants) and 24 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG13921-RG	FBtr0474139	4270	1129aa	FBpp0423138	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K3Y7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG13921-RF	FBtr0334072	5090	872aa	FBpp0306197	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2FBA3 M9PGV2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG13921-RB	FBtr0072773	4273	1120aa	FBpp0072656	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KVA8 Q8IGL3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG13921-RD	FBtr0303105	4270	1119aa	FBpp0292224	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W093	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG13921-RC	FBtr0303104	3372	873aa	FBpp0292223	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRP1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG13921-RE	FBtr0310623	3369	872aa	FBpp0302743	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGV2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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