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DB built by FlyBase

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Gene: CG16779 FBgn0037698

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Gene Synonyms

Location

Primary_assembly 3R: 9,461,084-9,493,677 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 67 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG16779-RG	FBtr0479924	12444	2005aa	FBpp0428256	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C8VV24 Q9VHD1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG16779-RC	FBtr0331350	12378	1946aa	FBpp0303768	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFL1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16779-RB	FBtr0331349	12291	1980aa	FBpp0303767	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGL1 Q9VHD1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16779-RD	FBtr0331351	11866	1795aa	FBpp0303769	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFG7 C8VV24 Q1ECA4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16779-RF	FBtr0479923	10118	2005aa	FBpp0428255	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHD1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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