Chromodomain-helicase-DNA-binding protein 1
Primary_assembly 2L: 2,979,562-2,987,723 reverse strand.
BDGP6.46:AE014134.6
This gene has 3 transcripts (splice variants), 76 orthologues and 16 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Chd1-RB | FBtr0305980 | 6216 | 1900aa | FBpp0297122 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1PFT0 B1PFT7 B1PFV8 M9ND16 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Chd1-RC | FBtr0331654 | 6463 | 1881aa | FBpp0304044 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1PFZ0 B1PG01 B1PG07 B1PG10 B1PG15 C0HBU2 M9PEB2 Q6NP59 Q8SWV9 R9TG69 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Chd1-RA | FBtr0077674 | 6332 | 1883aa | FBpp0077358 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B1PFS9 B1PFT1 B1PFT9 B1PFU1 B1PFV0 B1PFZ1 B1PFZ4 Q7KU24 | - | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
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