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DB built by FlyBase

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Gene: Pif1A FBgn0261015

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Description

PFTAIRE-interacting factor 1A

Gene Synonyms

Location

Primary_assembly 3R: 8,774,286-8,801,176 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants) and 5 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pif1A-RJ	FBtr0433507	7780	1264aa	FBpp0390639	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JDD0 C6TP23 Q6IKF7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pif1A-RG	FBtr0332500	7761	1226aa	FBpp0304776	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RVD3 C6TP55 E1JIF4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pif1A-RH	FBtr0332501	7694	1264aa	FBpp0304777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JDD0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pif1A-RA	FBtr0301876	6324	879aa	FBpp0291090	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8WTI8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pif1A-RI	FBtr0332502	3253	796aa	FBpp0304778	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRQ5	-	-

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Summary

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