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DB built by FlyBase

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Gene: RanBPM FBgn0262114

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Description

Ran-binding protein M

Gene Synonyms

Location

Primary_assembly 2R: 10,429,708-10,436,581 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 6 transcripts (splice variants), 53 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
RanBPM-RG	FBtr0346961	4370	1127aa	FBpp0312425	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUM4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
RanBPM-RD	FBtr0100460	4372	962aa	FBpp0099887	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C4IY22 Q4Z8K6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
RanBPM-RA	FBtr0088263	4370	960aa	FBpp0087358	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RanBPM-RE	FBtr0306247	4369	961aa	FBpp0297357	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K851	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RanBPM-RC	FBtr0088262	3855	598aa	FBpp0087357	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X5D3H6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RanBPM-RF	FBtr0330614	3617	770aa	FBpp0303464	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFL0	-	-

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Summary

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