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DB built by FlyBase

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Gene: RapGAP1 FBgn0264895

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Description

Rap GTPase activating protein 1

Gene Synonyms

Location

Primary_assembly 2L: 7,497,805-7,578,980 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants) and 83 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
RapGAP1-RH	FBtr0334849	4521	959aa	FBpp0306873	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYW8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RapGAP1-RE	FBtr0334847	4951	850aa	FBpp0306871	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM02	-	-
RapGAP1-RD	FBtr0334846	4545	933aa	FBpp0306870	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM00	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RapGAP1-RI	FBtr0334850	4462	933aa	FBpp0306874	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM00	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RapGAP1-RF	FBtr0334848	4222	876aa	FBpp0306872	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O44090 Q4V5E1 Q59DZ5 Q95SF4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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