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Summary
- Splice variants
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DB built by FlyBase

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Gene: kar FBgn0001296

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Description

karmoisin

Gene Synonyms

Location

Primary_assembly 3R: 12,682,186-12,689,367 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 2 transcripts (splice variants), 169 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
kar-RB	FBtr0302563	2321	612aa	FBpp0291719	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C8VV48	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
kar-RA	FBtr0082666	2176	553aa	FBpp0082135	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95SN6 Q9VG39	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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