Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Metazoan Compara
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- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
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DB built by FlyBase

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Gene: CG18131 FBgn0031343

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Gene Synonyms

Location

Primary_assembly 2L: 1,498,455-1,500,608 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 6 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG18131-RH	FBtr0334822	1744	440aa	FBpp0306856	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F3YDN4 Q0E8U8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG18131-RD	FBtr0077939	1628	440aa	FBpp0077604	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8U8	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG18131-RG	FBtr0334821	1627	401aa	FBpp0306855	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG18131-RB	FBtr0077937	1565	440aa	FBpp0077602	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8U8	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG18131-RA	FBtr0077938	1511	401aa	FBpp0077603	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPW9 Q8T909	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG18131-RC	FBtr0077936	1454	401aa	FBpp0077601	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPW9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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