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Summary
Sequence
- Exons
- cDNA
- Protein
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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DB built by FlyBase

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Transcript: FBtr0479702 lncRNA:CR46450-RC

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Description

long non-coding RNA:CR46450

Gene Synonyms

Location

Primary_assembly 2L: 23,176,291-23,177,906 forward strand.

About this transcript

This transcript has 2 exons.

Gene

This transcript is a product of gene FBgn0287461 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
lncRNA:CR46450-RD	FBtr0479703	1541	No protein	A non-coding gene.ncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
lncRNA:CR46450-RB	FBtr0479701	1345	No protein	A non-coding gene.ncRNA	-
lncRNA:CR46450-RC	FBtr0479702	1102	No protein	A non-coding gene.ncRNA	-
lncRNA:CR46450-RA	FBtr0479700	994	No protein	A non-coding gene.ncRNA	-
lncRNA:CR46450-RE	FBtr0479704	697	No protein	A non-coding gene.ncRNA	-

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Exons

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Download sequence

Exons/ Introns

Non-coding exon
Flanking sequence
Intron sequence

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........taacgatgcttcacaacactaaataacctgtcttcaccaactcttaagat
1	FBtr0479702-E1	23,176,291	23,176,469	-	-	179	AAACAAACGCTTAAATATAGAGACAAAGCTGCATTTTGGTCGTTTTGTTGTACGCTTTTC CGTCTTTCTTTTTTTTATGGAAGGTATGGGATGGCCTGGAAGAGCAACAGACACCGCGGC GACTGCCATTCTTTCTGCTGAAATCAGGGATTTTCATTGTGAACTAAAACTGTGATAAT
	Intron 1-2	23,176,470	23,176,983			514	gtaggttaaggattctattgtatct..........tttatatctttctcctactttacag
2	FBtr0479702-E2	23,176,984	23,177,906	-	-	923	TTTGGATTGGTACATTTACGACCGTAAACTAGAAGTGGAGCGGATGCGATTCTGTGTCGT CAAGTGGCCCCGATGCTTAGATCGATTCAGAATCTCCAGTGCTAATCGACAAAGACTCAG CGTTCAAGTGGTCGCCGATGCAGCATTTCGGATGTTTGTTGATACTATGTTTTAGCGTTT AAGTGGGCCGCAACAATGTACTTGGTGATATATAGTTACTGGTACCGTAGCAGGTGTAGC TATAGTGGGTGTGAAGGTGGCATGTGGTGTAGTCTCTGGTGTGAAAATTGTTGTGTTCTT TGGGAAACATGCGACGACAAATACTACTATCAGTAGTATATCGAGCATCGTGTAAGTCCT TGTTGTTTGGATCGTGGTTTCCCACTGTAATTTGTTGATCTGCATTTTTGTTTCCATATC CTCCATCCTCAGCTGTTGTATTCCCAACTGGTGGGTTGTCCTGTTTCTCTTAATCGTCTC TACCCGAGGTATGTCCAACATCAATTCTTCTGTGCCAAGCCTCTCCACCGCTTCGTATTG TACGTTGTACACCATCGCCTTGCAATGGGTGAATGTTTTGTCGACTCCGAAATCCGTCTG CAGTTTGACATTCCTTCCATTGAAATTTGCGATGTAGCCGGGCTCCGGTTCAAAGACCGT TGCGACCAATCCGACGTCCTTCGCCTCGCCTTCGCCTTCAAATTTGGGCGGTAACAAAAA TAGCACTGTAGTAGTTTGCTAAAACTAAATAAAAAAAAGAATTCAACAAATGGATTATAT CTGAAGAGCTGTTGGCAATGACAGCTGCGCATCGTCTTGGCATGGAATCCAAGTCCTGGC ACCGTTTTTGAGGAATTTTGCTCCATGAATCCTTGACCACACCCCAAAGTTCCTCGTTAT TATTGGGTTTGGCTTTAGAAACC
	3' downstream sequence						tttttttcacgtccgcccaaaggttttcgattgcaattcaagtcgggtga..........

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