Drosophila subobscura (Fruit fly, 14011-0131.10) (UCBerk_Dsub_1.0)

Drosophila subobscura (Fruit fly, 14011-0131.10) Assembly and Gene Annotation

About Drosophila subobscura

Drosophila subobscura is a species of fruit fly in the family Drosophilidae. Originally found around the Mediterranean, it has spread to most of Europe and the Near East. It has been introduced into the west coasts of Canada, the United States, and Chile. Its closest relative is Drosophila madeirensis, found in the Madeira Islands, followed by D. guanche, found in the Canary Islands. These three species form the D. subobscura species subgroup. When they mate, males and females perform an elaborate courtship dance, in which the female can either turn away to end the mating ritual, or stick out her proboscis in response to the male's, allowing copulation to proceed. D. subobscura has been regarded as a model organism for its use in evolutionary-biological studies.

Picture credit: Creative Commons Attribution 2.0 via Wikimedia Commons (Image source)

Taxonomy ID 7241

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_008121235.1].

The total length of the assembly is 126232139 bp contained within 31 scaffolds. The scaffold N50 value is 24182865, the scaffold L50 value is 3. The GC% content of the assembly is 45.0%.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_008121235.1.

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

Statistics

Summary

AssemblyUCBerk_Dsub_1.0, INSDC Assembly GCA_008121235.1,
Database version112.1
Golden Path Length126,248,017
Genebuild byNCBI
Genebuild methodImport
Data sourceUC Berkeley

Gene counts

Coding genes13,440
Non coding genes866
Small non coding genes460
Long non coding genes406
Pseudogenes75
Gene transcripts23,871